Analysis of interatomic Contacts of Structural Units in PDB entry:
3CJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CJF entry

There are 6 chains in PDB entry 3CJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 815THR 859
A
 ARG 861ILE 1004
A
 TYR 1006LYS 1021
A
 ILE 1023ILE 1042
A
 ASP 1044PHE 1113
A
 ARG 1115ALA 1166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3CJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
821 826Right-handed alpha
Helix 2
2
A
828 830Right-handed 310
Helix 3
3
A
873 891Right-handed alpha
Helix 4
4
A
921 929Right-handed alpha
Helix 5
5
A
999 1020Right-handed alpha
Helix 6
6
A
1028 1030Right-handed 310
Helix 7
7
A
1066 1070Right-handed 310
Helix 8
8
A
1071 1078Right-handed alpha
Helix 9
9
A
1081 1098Right-handed alpha
Helix 10
10
A
1110 1120Right-handed alpha
Helix 11
11
A
1130 1141Right-handed alpha
Helix 12
12
A
1144 1148Right-handed 310
Helix 13
13
A
1150 1166Right-handed alpha
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There are 3 sheets in PDB entry 3CJF. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
832 840first strand
Strand 2
A
845 852anti-parallel
Strand 3
A
860 867anti-parallel
Strand 4
A
911 915anti-parallel
Strand 5
A
899 903anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1023 1024first strand
Strand 2
A
1048 1049anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1032 1034first strand
Strand 2
A
1040 1042anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il