Analysis of interatomic Contacts of Structural Units in PDB entry:
3CJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CJR entry

There are 2 chains in PDB entry 3CJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ARG 254
B
MET 1GLU 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3CJR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
13 15Right-handed 310
Helix 2
2
A
16 24Right-handed alpha
Helix 3
3
A
60 66Right-handed alpha
Helix 4
4
A
104 118Right-handed alpha
Helix 5
5
A
132 141Right-handed alpha
Helix 6
6
A
151 153Right-handed 310
Helix 7
7
A
154 165Right-handed alpha
Helix 8
8
A
175 180Right-handed alpha
Helix 9
9
A
181 183Right-handed 310
Helix 10
10
A
193 207Right-handed alpha
Helix 11
11
A
223 234Right-handed alpha
Helix 12
12
B
22 29Right-handed alpha
Helix 13
13
B
33 45Right-handed alpha
Helix 14
14
B
46 49Right-handed 310
Helix 15
15
B
73 79Right-handed alpha
Helix 16
16
B
102 105Right-handed 310
Helix 17
17
B
106 111Right-handed alpha
Helix 18
18
B
123 133Right-handed alpha
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There are 3 sheets in PDB entry 3CJR. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
50 52first strand
Strand 2
A
2 7anti-parallel
Strand 3
A
34 39anti-parallel
Strand 4
A
27 30anti-parallel
Strand 5
B
4 13anti-parallel
Strand 6
B
52 60anti-parallel
Strand 7
B
65 69anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
70 72first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
89 92parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
170 173first strand
Strand 2
A
144 149parallel
Strand 3
A
123 127parallel
Strand 4
A
185 191parallel
Strand 5
A
208 220parallel
Strand 6
A
247 253anti-parallel
Strand 7
A
237 244anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il