Analysis of interatomic Contacts of Structural Units in PDB entry:
3CVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CVM entry

There are 2 chains in PDB entry 3CVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0PRO 379
B
 ALA 0PRO 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3CVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 26Right-handed alpha
Helix 2
2
A
35 50Right-handed alpha
Helix 3
3
A
51 63Right-handed alpha
Helix 4
4
A
70 84Right-handed alpha
Helix 5
5
A
85 88Right-handed 310
Helix 6
6
A
108 118Right-handed alpha
Helix 7
7
A
128 144Right-handed alpha
Helix 8
8
A
180 184Right-handed 310
Helix 9
9
A
247 252Right-handed alpha
Helix 10
10
A
255 265Right-handed alpha
Helix 11
11
A
286 293Right-handed alpha
Helix 12
12
A
296 300Right-handed 310
Helix 13
13
B
3 26Right-handed alpha
Helix 14
14
B
35 50Right-handed alpha
Helix 15
15
B
51 63Right-handed alpha
Helix 16
16
B
70 84Right-handed alpha
Helix 17
17
B
85 88Right-handed 310
Helix 18
18
B
108 118Right-handed alpha
Helix 19
19
B
128 144Right-handed alpha
Helix 20
20
B
180 184Right-handed 310
Helix 21
21
B
247 252Right-handed alpha
Helix 22
22
B
255 266Right-handed alpha
Helix 23
23
B
286 293Right-handed alpha
Helix 24
24
B
296 300Right-handed 310
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There are 6 sheets in PDB entry 3CVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 2first strand
Strand 2
B
196 214parallel
Strand 3
B
185 190anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
369 376anti-parallel
Strand 3
B
358 364anti-parallel
Strand 4
B
233 240anti-parallel
Strand 5
B
220 227anti-parallel
Strand 6
B
196 214anti-parallel
Strand 7
B
267 276anti-parallel
Strand 8
B
351 353parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
369 376anti-parallel
Strand 3
A
358 364anti-parallel
Strand 4
A
233 240anti-parallel
Strand 5
A
220 227anti-parallel
Strand 6
A
196 214anti-parallel
Strand 7
A
267 276anti-parallel
Strand 8
A
351 353parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 190first strand
Strand 2
A
196 214anti-parallel
Strand 3
B
1 2parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
90 100parallel
Strand 3
A
161 174anti-parallel
Strand 4
A
332 345anti-parallel
Strand 5
A
315 328anti-parallel
Strand 6
A
278 285anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
90 100parallel
Strand 3
B
161 174anti-parallel
Strand 4
B
332 344anti-parallel
Strand 5
B
316 328anti-parallel
Strand 6
B
278 285anti-parallel
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