Analysis of interatomic Contacts of Structural Units in PDB entry:
3CVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3CVU entry

There are 4 chains in PDB entry 3CVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 1 G 7
C
 G 10 T 15
D
 T 1 G 15
A
 ARG 5ARG 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3CVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 34Right-handed alpha
Helix 2
2
A
47 53Right-handed 310
Helix 3
3
A
57 78Right-handed alpha
Helix 4
4
A
88 100Right-handed alpha
Helix 5
5
A
112 130Right-handed alpha
Helix 6
6
A
143 151Right-handed alpha
Helix 7
7
A
158 167Right-handed alpha
Helix 8
8
A
190 196Right-handed alpha
Helix 9
9
A
204 209Right-handed alpha
Helix 10
10
A
211 215Right-handed 310
Helix 11
11
A
223 236Right-handed alpha
Helix 12
12
A
237 244Right-handed alpha
Helix 13
13
A
245 249Right-handed 310
Helix 14
14
A
261 267Right-handed alpha
Helix 15
15
A
271 286Right-handed alpha
Helix 16
16
A
295 312Right-handed alpha
Helix 17
17
A
333 342Right-handed alpha
Helix 18
18
A
347 361Right-handed alpha
Helix 19
19
A
364 376Right-handed alpha
Helix 20
20
A
383 395Right-handed alpha
Helix 21
21
A
399 411Right-handed alpha
Helix 22
22
A
427 432Right-handed 310
Helix 23
23
A
436 443Right-handed alpha
Helix 24
24
A
444 447Right-handed 310
Helix 25
25
A
450 455Right-handed alpha
Helix 26
26
A
456 460Right-handed 310
Helix 27
27
A
461 468Right-handed alpha
Helix 28
28
A
482 505Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3CVU.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
38 46parallel
Strand 3
A
6 12parallel
Strand 4
A
102 108parallel
Strand 5
A
132 136parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il