Analysis of interatomic Contacts of Structural Units in PDB entry:
3D01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D01 entry

There are 9 chains in PDB entry 3D01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ILE 163
B
 ASN 4VAL 165
C
 GLU 3ASP 164
D
 GLU 3ILE 163
E
 ASN 4ASP 164
F
 THR 2ASP 164
G
 THR 2ILE 163
H
 GLU 3ASP 164
I
 THR 2SER 97
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 72 helices in PDB entry 3D01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 21Right-handed alpha
Helix 2
2
A
69 92Right-handed alpha
Helix 3
3
A
95 99Right-handed 310
Helix 4
4
A
117 134Right-handed alpha
Helix 5
5
A
135 138Right-handed 310
Helix 6
6
A
149 153Right-handed 310
Helix 7
7
B
4 21Right-handed alpha
Helix 8
8
B
69 92Right-handed alpha
Helix 9
9
B
95 97Right-handed 310
Helix 10
10
B
117 134Right-handed alpha
Helix 11
11
B
135 138Right-handed 310
Helix 12
12
B
149 153Right-handed 310
Helix 13
13
C
3 22Right-handed alpha
Helix 14
14
C
69 92Right-handed alpha
Helix 15
15
C
95 97Right-handed 310
Helix 16
16
C
117 134Right-handed alpha
Helix 17
17
C
135 138Right-handed 310
Helix 18
18
C
149 153Right-handed 310
Helix 19
19
D
3 21Right-handed alpha
Helix 20
20
D
69 92Right-handed alpha
Helix 21
21
D
95 99Right-handed 310
Helix 22
22
D
117 134Right-handed alpha
Helix 23
23
D
135 138Right-handed 310
Helix 24
24
D
149 153Right-handed 310
Helix 25
25
E
4 21Right-handed alpha
Helix 26
26
E
69 92Right-handed alpha
Helix 27
27
E
95 97Right-handed 310
Helix 28
28
E
117 134Right-handed alpha
Helix 29
29
E
135 138Right-handed 310
Helix 30
30
E
149 153Right-handed 310
Helix 31
31
F
2 21Right-handed alpha
Helix 32
32
F
69 92Right-handed alpha
Helix 33
33
F
95 97Right-handed 310
Helix 34
34
F
117 134Right-handed alpha
Helix 35
35
F
135 138Right-handed 310
Helix 36
36
F
149 153Right-handed 310
Helix 37
37
G
2 21Right-handed alpha
Helix 38
38
G
69 92Right-handed alpha
Helix 39
39
G
95 99Right-handed 310
Helix 40
40
G
117 134Right-handed alpha
Helix 41
41
G
135 138Right-handed 310
Helix 42
42
G
149 153Right-handed 310
Helix 43
43
H
3 21Right-handed alpha
Helix 44
44
H
69 92Right-handed alpha
Helix 45
45
H
95 97Right-handed 310
Helix 46
46
H
117 134Right-handed alpha
Helix 47
47
H
135 138Right-handed 310
Helix 48
48
H
149 153Right-handed 310
Helix 49
49
I
2 21Right-handed alpha
Helix 50
50
I
69 92Right-handed alpha
Helix 51
51
I
95 97Right-handed 310
Helix 52
52
I
117 134Right-handed alpha
Helix 53
53
I
135 138Right-handed 310
Helix 54
54
I
149 153Right-handed 310
Helix 55
55
J
3 21Right-handed alpha
Helix 56
56
J
69 92Right-handed alpha
Helix 57
57
J
95 97Right-handed 310
Helix 58
58
J
117 134Right-handed alpha
Helix 59
59
J
135 138Right-handed 310
Helix 60
60
J
149 153Right-handed 310
Helix 61
61
K
2 21Right-handed alpha
Helix 62
62
K
69 92Right-handed alpha
Helix 63
63
K
95 97Right-handed 310
Helix 64
64
K
117 134Right-handed alpha
Helix 65
65
K
135 138Right-handed 310
Helix 66
66
K
149 153Right-handed 310
Helix 67
67
L
2 21Right-handed alpha
Helix 68
68
L
69 92Right-handed alpha
Helix 69
69
L
95 97Right-handed 310
Helix 70
70
L
117 134Right-handed alpha
Helix 71
71
L
135 138Right-handed 310
Helix 72
72
L
149 153Right-handed 310
Back to top of page

There are 24 sheets in PDB entry 3D01. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
44 50anti-parallel
Strand 3
A
155 162anti-parallel
Strand 4
A
101 110anti-parallel
Strand 5
A
140 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
44 50anti-parallel
Strand 3
B
155 163anti-parallel
Strand 4
B
99 110anti-parallel
Strand 5
B
140 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 41first strand
Strand 2
C
44 50anti-parallel
Strand 3
C
155 163anti-parallel
Strand 4
C
99 110anti-parallel
Strand 5
C
140 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 41first strand
Strand 2
D
44 50anti-parallel
Strand 3
D
155 162anti-parallel
Strand 4
D
101 110anti-parallel
Strand 5
D
140 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 54first strand
Strand 2
D
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 41first strand
Strand 2
E
44 50anti-parallel
Strand 3
E
155 163anti-parallel
Strand 4
E
99 110anti-parallel
Strand 5
E
140 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 54first strand
Strand 2
E
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
38 41first strand
Strand 2
F
44 50anti-parallel
Strand 3
F
155 163anti-parallel
Strand 4
F
99 110anti-parallel
Strand 5
F
140 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
53 54first strand
Strand 2
F
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
38 41first strand
Strand 2
G
44 50anti-parallel
Strand 3
G
155 162anti-parallel
Strand 4
G
101 110anti-parallel
Strand 5
G
140 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
53 54first strand
Strand 2
G
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
38 41first strand
Strand 2
H
44 50anti-parallel
Strand 3
H
155 163anti-parallel
Strand 4
H
99 110anti-parallel
Strand 5
H
140 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
53 54first strand
Strand 2
H
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
38 41first strand
Strand 2
I
44 50anti-parallel
Strand 3
I
155 163anti-parallel
Strand 4
I
99 110anti-parallel
Strand 5
I
140 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
53 54first strand
Strand 2
I
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
38 41first strand
Strand 2
J
44 50anti-parallel
Strand 3
J
155 163anti-parallel
Strand 4
J
99 110anti-parallel
Strand 5
J
140 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
53 54first strand
Strand 2
J
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
38 41first strand
Strand 2
K
44 50anti-parallel
Strand 3
K
155 163anti-parallel
Strand 4
K
99 110anti-parallel
Strand 5
K
140 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
53 54first strand
Strand 2
K
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
38 41first strand
Strand 2
L
44 50anti-parallel
Strand 3
L
155 163anti-parallel
Strand 4
L
99 110anti-parallel
Strand 5
L
140 146parallel
Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
53 54first strand
Strand 2
L
57 58anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il