Analysis of interatomic Contacts of Structural Units in PDB entry:
3D0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D0E entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 3D0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 146LYS 308
A
 PHE 310ILE 450
A
 PRO 452ARG 480
B
 LYS 146LYS 308
B
 PHE 310ILE 450
B
 PRO 452ARG 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3D0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
148 150Right-handed 310
Helix 2
2
A
185 191Right-handed alpha
Helix 3
3
A
193 207Right-handed alpha
Helix 4
4
A
236 245Right-handed alpha
Helix 5
5
A
248 269Right-handed alpha
Helix 6
6
A
277 279Right-handed 310
Helix 7
7
A
313 317Right-handed 310
Helix 8
8
A
318 323Right-handed 310
Helix 9
9
A
330 346Right-handed alpha
Helix 10
10
A
354 365Right-handed alpha
Helix 11
11
A
374 385Right-handed alpha
Helix 12
12
A
399 405Right-handed alpha
Helix 13
13
A
406 410Right-handed 310
Helix 14
14
A
413 419Right-handed alpha
Helix 15
15
A
440 445Right-handed alpha
Helix 16
16
B
148 150Right-handed 310
Helix 17
17
B
185 191Right-handed alpha
Helix 18
18
B
193 207Right-handed alpha
Helix 19
19
B
236 245Right-handed alpha
Helix 20
20
B
248 269Right-handed alpha
Helix 21
21
B
277 279Right-handed 310
Helix 22
22
B
313 317Right-handed 310
Helix 23
23
B
318 323Right-handed 310
Helix 24
24
B
330 346Right-handed alpha
Helix 25
25
B
354 365Right-handed alpha
Helix 26
26
B
374 385Right-handed alpha
Helix 27
27
B
399 405Right-handed alpha
Helix 28
28
B
406 410Right-handed 310
Helix 29
29
B
413 419Right-handed alpha
Helix 30
30
B
440 445Right-handed alpha
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There are 4 sheets in PDB entry 3D0E. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 160first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
177 184anti-parallel
Strand 4
A
224 229anti-parallel
Strand 5
A
215 220anti-parallel
Strand 6
A
475 476anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
289 291anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 160first strand
Strand 2
B
165 171anti-parallel
Strand 3
B
177 184anti-parallel
Strand 4
B
224 229anti-parallel
Strand 5
B
215 220anti-parallel
Strand 6
B
475 476anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 283first strand
Strand 2
B
289 291anti-parallel
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