Analysis of interatomic Contacts of Structural Units in PDB entry:
3D1O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D1O entry

There are 2 chains in PDB entry 3D1O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 34ALA 346
B
 THR 34ALA 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 3D1O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 46Right-handed 310
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
81 85Right-handed 310
Helix 4
4
A
96 101Right-handed alpha
Helix 5
5
A
109 122Right-handed alpha
Helix 6
6
A
152 154Right-handed 310
Helix 7
7
A
160 176Right-handed alpha
Helix 8
8
A
186 190Right-handed 310
Helix 9
9
A
204 212Right-handed alpha
Helix 10
10
A
228 241Right-handed alpha
Helix 11
11
A
256 271Right-handed alpha
Helix 12
12
A
275 286Right-handed alpha
Helix 13
13
A
299 304Right-handed 310
Helix 14
14
A
305 327Right-handed alpha
Helix 15
15
A
334 342Right-handed alpha
Helix 16
16
B
41 46Right-handed 310
Helix 17
17
B
47 51Right-handed 310
Helix 18
18
B
81 85Right-handed 310
Helix 19
19
B
96 101Right-handed alpha
Helix 20
20
B
109 122Right-handed alpha
Helix 21
21
B
150 154Right-handed 310
Helix 22
22
B
160 176Right-handed alpha
Helix 23
23
B
186 190Right-handed 310
Helix 24
24
B
204 212Right-handed alpha
Helix 25
25
B
228 242Right-handed alpha
Helix 26
26
B
256 271Right-handed alpha
Helix 27
27
B
275 286Right-handed alpha
Helix 28
28
B
299 303Right-handed 310
Helix 29
29
B
304 327Right-handed alpha
Helix 30
30
B
334 342Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3D1O. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
179 183anti-parallel
Strand 3
A
53 58parallel
Strand 4
A
144 150anti-parallel
Strand 5
A
138 141anti-parallel
Strand 6
A
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
102 105anti-parallel
Strand 3
A
247 251parallel
Strand 4
A
128 134parallel
Strand 5
A
215 221parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 198first strand
Strand 2
B
179 183anti-parallel
Strand 3
B
55 58parallel
Strand 4
B
144 149anti-parallel
Strand 5
B
138 141anti-parallel
Strand 6
B
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
102 105anti-parallel
Strand 3
B
247 251parallel
Strand 4
B
128 134parallel
Strand 5
B
215 221parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il