Analysis of interatomic Contacts of Structural Units in PDB entry:
3D38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D38 entry

There are 4 chains in PDB entry 3D38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 CYS 1LYS 332
H
 TYR 2LEU 258
L
 ALA 1SER 273
M
 ALA 1LYS 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 3D38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
24 35Right-handed alpha
Helix 2
2
C
36 38Right-handed 310
Helix 3
3
C
51 56Right-handed alpha
Helix 4
4
C
66 82Right-handed alpha
Helix 5
5
C
101 121Right-handed alpha
Helix 6
6
C
131 137Right-handed alpha
Helix 7
7
C
168 170Right-handed 310
Helix 8
8
C
171 178Right-handed alpha
Helix 9
9
C
188 194Right-handed alpha
Helix 10
10
C
216 220Right-handed 310
Helix 11
11
C
223 241Right-handed alpha
Helix 12
12
C
243 247Right-handed 310
Helix 13
13
C
249 253Right-handed 310
Helix 14
14
C
256 260Right-handed 310
Helix 15
15
C
261 281Right-handed alpha
Helix 16
16
C
283 288Right-handed 310
Helix 17
17
C
304 310Right-handed alpha
Helix 18
18
C
314 319Right-handed 310
Helix 19
19
C
325 329Right-handed 310
Helix 20
20
H
12 30Right-handed alpha
Helix 21
21
H
31 36Right-handed alpha
Helix 22
22
H
56 61Right-handed alpha
Helix 23
23
H
106 111Right-handed alpha
Helix 24
24
H
112 116Right-handed 310
Helix 25
25
H
199 201Right-handed 310
Helix 26
26
H
214 221Right-handed 310
Helix 27
27
H
231 249Right-handed alpha
Helix 28
28
H
250 254Right-handed 310
Helix 29
29
L
6 10Right-handed 310
Helix 30
30
L
18 23Right-handed 310
Helix 31
31
L
31 55Right-handed alpha
Helix 32
32
L
70 74Right-handed 310
Helix 33
33
L
79 82Right-handed 310
Helix 34
34
L
83 111Right-handed alpha
Helix 35
35
L
115 121Right-handed alpha
Helix 36
36
L
121 133Right-handed alpha
Helix 37
37
L
133 139Right-handed alpha
Helix 38
38
L
141 145Right-handed 310
Helix 39
39
L
151 163Right-handed alpha
Helix 40
40
L
164 165Right-handed 310
Helix 41
41
L
166 169Right-handed 310
Helix 42
42
L
170 199Right-handed alpha
Helix 43
43
L
208 221Right-handed alpha
Helix 44
44
L
225 251Right-handed alpha
Helix 45
45
L
258 263Right-handed alpha
Helix 46
46
L
263 268Right-handed alpha
Helix 47
47
L
269 273Right-handed 310
Helix 48
48
M
2 7Right-handed alpha
Helix 49
49
M
37 41Right-handed 310
Helix 50
50
M
52 77Right-handed alpha
Helix 51
51
M
80 87Right-handed alpha
Helix 52
52
M
88 91Right-handed 310
Helix 53
53
M
106 109Right-handed 310
Helix 54
54
M
110 138Right-handed alpha
Helix 55
55
M
142 160Right-handed alpha
Helix 56
56
M
160 167Right-handed alpha
Helix 57
57
M
168 172Right-handed 310
Helix 58
58
M
176 191Right-handed alpha
Helix 59
59
M
193 196Right-handed 310
Helix 60
60
M
197 224Right-handed alpha
Helix 61
61
M
225 228Right-handed 310
Helix 62
62
M
231 238Right-handed alpha
Helix 63
63
M
240 255Right-handed alpha
Helix 64
64
M
261 285Right-handed alpha
Helix 65
65
M
291 299Right-handed alpha
Helix 66
66
M
314 318Right-handed 310
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There are 9 sheets in PDB entry 3D38. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 9first strand
Strand 2
C
22 23anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 6first strand
Strand 2
H
10 11anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
66 69first strand
Strand 2
H
75 78anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
90 92first strand
Strand 2
H
101 103anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
134 136first strand
Strand 2
H
164 174anti-parallel
Strand 3
H
179 187anti-parallel
Strand 4
H
192 197anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
134 136first strand
Strand 2
H
164 174anti-parallel
Strand 3
H
156 158anti-parallel
Strand 4
H
208 209parallel
Strand 5
H
202 203anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
144 145first strand
Strand 2
M
12 13anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
25 26first strand
Strand 2
L
29 30anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
28 29first strand
Strand 2
M
49 50anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il