Analysis of interatomic Contacts of Structural Units in PDB entry:
3D83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3D83 entry

There are 3 chains in PDB entry 3D83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 4LYS 118
A
GLN 120ASP 161
A
GLU 163PRO 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3D83. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
61 78Right-handed alpha
Helix 2
2
A
112 120Right-handed alpha
Helix 3
3
A
123 144Right-handed alpha
Helix 4
4
A
152 154Right-handed 310
Helix 5
5
A
176 180Right-handed 310
Helix 6
6
A
183 188Right-handed alpha
Helix 7
7
A
190 195Right-handed alpha
Helix 8
8
A
202 219Right-handed alpha
Helix 9
9
A
227 240Right-handed alpha
Helix 10
10
A
243 250Right-handed alpha
Helix 11
11
A
252 260Right-handed alpha
Helix 12
12
A
269 274Right-handed alpha
Helix 13
13
A
278 289Right-handed alpha
Helix 14
14
A
292 296Right-handed 310
Helix 15
15
A
298 304Right-handed alpha
Helix 16
16
A
305 309Right-handed 310
Helix 17
17
A
325 330Right-handed 310
Helix 18
18
A
333 347Right-handed alpha
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There are 3 sheets in PDB entry 3D83. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
8 12first strand
Strand 2
A
17 21anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
24 33first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
49 55anti-parallel
Strand 4
A
103 107anti-parallel
Strand 5
A
88 90anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
156 158first strand
Strand 2
A
164 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il