Analysis of interatomic Contacts of Structural Units in PDB entry:
3DAN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DAN entry

There is 1 chain in PDB entry 3DAN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 3DAN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
19 32Right-handed alpha
Helix 3
3
A
34 48Right-handed alpha
Helix 4
4
A
76 82Right-handed 310
Helix 5
5
A
99 104Right-handed 310
Helix 6
6
A
108 112Right-handed 310
Helix 7
7
A
116 134Right-handed alpha
Helix 8
8
A
136 160Right-handed alpha
Helix 9
9
A
164 182Right-handed alpha
Helix 10
10
A
184 188Right-handed 310
Helix 11
11
A
193 207Right-handed alpha
Helix 12
12
A
208 210Right-handed 310
Helix 13
13
A
215 224Right-handed alpha
Helix 14
14
A
229 232Right-handed 310
Helix 15
15
A
233 248Right-handed alpha
Helix 16
16
A
248 258Right-handed alpha
Helix 17
17
A
261 275Right-handed alpha
Helix 18
18
A
275 296Right-handed alpha
Helix 19
19
A
296 315Right-handed alpha
Helix 20
20
A
320 326Right-handed alpha
Helix 21
21
A
327 341Right-handed alpha
Helix 22
22
A
376 380Right-handed alpha
Helix 23
23
A
398 408Right-handed 310
Helix 24
24
A
428 446Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3DAN. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
67 71anti-parallel
Strand 3
A
371 375parallel
Strand 4
A
346 351anti-parallel
Strand 5
A
86 87anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
462 470anti-parallel
Strand 3
A
447 455anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
363 366anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il