Analysis of interatomic Contacts of Structural Units in PDB entry:
3DBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DBL entry

There are 12 chains in PDB entry 3DBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 6LEU 534
B
LEU 11SER 442
I
ARG 91GLY 176
C
LYS 6LEU 534
D
LEU 11SER 442
J
MET 101GLY 176
E
LYS 6LEU 534
F
LEU 11THR 441
K
MET 101GLY 176
G
LYS 6LEU 534
H
LEU 11THR 441
L
MET 101GLY 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are195 helices in PDB entry 3DBL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
6 13Right-handed alpha
Helix 2
2
A
13 30Right-handed alpha
Helix 3
3
A
39 51Right-handed alpha
Helix 4
4
A
68 73Right-handed alpha
Helix 5
5
A
77 81Right-handed 310
Helix 6
6
A
84 95Right-handed alpha
Helix 7
7
A
108 116Right-handed alpha
Helix 8
8
A
117 123Right-handed 310
Helix 9
9
A
132 146Right-handed alpha
Helix 10
10
A
189 198Right-handed alpha
Helix 11
11
A
208 212Right-handed 310
Helix 12
12
A
213 228Right-handed alpha
Helix 13
13
A
236 249Right-handed alpha
Helix 14
14
A
262 271Right-handed alpha
Helix 15
15
A
271 276Right-handed alpha
Helix 16
16
A
282 291Right-handed alpha
Helix 17
17
A
291 296Right-handed alpha
Helix 18
18
A
302 317Right-handed alpha
Helix 19
19
A
335 367Right-handed alpha
Helix 20
20
A
376 386Right-handed alpha
Helix 21
21
A
397 403Right-handed alpha
Helix 22
22
A
408 416Right-handed alpha
Helix 23
23
A
422 440Right-handed alpha
Helix 24
24
A
448 468Right-handed alpha
Helix 25
25
A
475 486Right-handed alpha
Helix 26
26
A
490 511Right-handed alpha
Helix 27
27
B
17 25Right-handed alpha
Helix 28
28
B
40 49Right-handed alpha
Helix 29
29
B
58 69Right-handed alpha
Helix 30
30
B
84 88Right-handed 310
Helix 31
31
B
95 99Right-handed 310
Helix 32
32
B
102 115Right-handed alpha
Helix 33
33
B
126 130Right-handed 310
Helix 34
34
B
131 136Right-handed alpha
Helix 35
35
B
147 160Right-handed alpha
Helix 36
36
B
171 174Right-handed 310
Helix 37
37
B
200 207Right-handed 310
Helix 38
38
B
214 220Right-handed alpha
Helix 39
39
B
224 235Right-handed alpha
Helix 40
40
B
235 240Right-handed alpha
Helix 41
41
B
253 271Right-handed alpha
Helix 42
42
B
277 287Right-handed alpha
Helix 43
43
B
292 313Right-handed alpha
Helix 44
44
B
360 371Right-handed alpha
Helix 45
45
B
397 403Right-handed alpha
Helix 46
46
B
404 409Right-handed 310
Helix 47
47
I
122 135Right-handed alpha
Helix 48
48
I
137 141Right-handed 310
Helix 49
49
I
156 160Right-handed 310
Helix 50
50
C
8 13Right-handed alpha
Helix 51
51
C
13 30Right-handed alpha
Helix 52
52
C
39 51Right-handed alpha
Helix 53
53
C
66 73Right-handed alpha
Helix 54
54
C
77 81Right-handed 310
Helix 55
55
C
84 95Right-handed alpha
Helix 56
56
C
108 113Right-handed alpha
Helix 57
57
C
118 123Right-handed 310
Helix 58
58
C
132 147Right-handed alpha
Helix 59
59
C
189 199Right-handed alpha
Helix 60
60
C
213 229Right-handed alpha
Helix 61
61
C
236 249Right-handed alpha
Helix 62
62
C
262 271Right-handed alpha
Helix 63
63
C
271 276Right-handed alpha
Helix 64
64
C
282 290Right-handed alpha
Helix 65
65
C
291 296Right-handed alpha
Helix 66
66
C
302 317Right-handed alpha
Helix 67
67
C
335 368Right-handed alpha
Helix 68
68
C
371 375Right-handed 310
Helix 69
69
C
378 386Right-handed alpha
Helix 70
70
C
397 403Right-handed alpha
Helix 71
71
C
408 416Right-handed alpha
Helix 72
72
C
422 440Right-handed alpha
Helix 73
73
C
449 468Right-handed alpha
Helix 74
74
C
475 486Right-handed alpha
Helix 75
75
C
490 511Right-handed alpha
Helix 76
76
D
17 26Right-handed alpha
Helix 77
77
D
40 49Right-handed alpha
Helix 78
78
D
58 69Right-handed alpha
Helix 79
79
D
84 88Right-handed 310
Helix 80
80
D
102 115Right-handed alpha
Helix 81
81
D
126 130Right-handed 310
Helix 82
82
D
131 136Right-handed alpha
Helix 83
83
D
147 161Right-handed alpha
Helix 84
84
D
171 174Right-handed 310
Helix 85
85
D
214 220Right-handed alpha
Helix 86
86
D
224 235Right-handed alpha
Helix 87
87
D
235 240Right-handed alpha
Helix 88
88
D
253 272Right-handed alpha
Helix 89
89
D
277 287Right-handed alpha
Helix 90
90
D
292 313Right-handed alpha
Helix 91
91
D
360 371Right-handed alpha
Helix 92
92
D
397 403Right-handed alpha
Helix 93
93
D
404 409Right-handed 310
Helix 94
94
D
412 416Right-handed 310
Helix 95
95
J
122 135Right-handed alpha
Helix 96
96
J
137 141Right-handed 310
Helix 97
97
E
6 13Right-handed alpha
Helix 98
98
E
13 30Right-handed alpha
Helix 99
99
E
39 51Right-handed alpha
Helix 100
100
E
66 73Right-handed alpha
Helix 101
101
E
77 81Right-handed 310
Helix 102
102
E
84 95Right-handed alpha
Helix 103
103
E
108 116Right-handed alpha
Helix 104
104
E
117 123Right-handed 310
Helix 105
105
E
132 146Right-handed alpha
Helix 106
106
E
189 198Right-handed alpha
Helix 107
107
E
205 210Right-handed alpha
Helix 108
108
E
213 228Right-handed alpha
Helix 109
109
E
236 249Right-handed alpha
Helix 110
110
E
262 271Right-handed alpha
Helix 111
111
E
271 276Right-handed alpha
Helix 112
112
E
282 291Right-handed alpha
Helix 113
113
E
291 296Right-handed alpha
Helix 114
114
E
302 317Right-handed alpha
Helix 115
115
E
335 369Right-handed alpha
Helix 116
116
E
377 386Right-handed alpha
Helix 117
117
E
397 403Right-handed alpha
Helix 118
118
E
408 416Right-handed alpha
Helix 119
119
E
422 440Right-handed alpha
Helix 120
120
E
446 448Right-handed 310
Helix 121
121
E
449 468Right-handed alpha
Helix 122
122
E
475 486Right-handed alpha
Helix 123
123
E
490 511Right-handed alpha
Helix 124
124
F
17 26Right-handed alpha
Helix 125
125
F
40 49Right-handed alpha
Helix 126
126
F
58 70Right-handed alpha
Helix 127
127
F
85 90Right-handed 310
Helix 128
128
F
95 99Right-handed 310
Helix 129
129
F
102 115Right-handed alpha
Helix 130
130
F
126 130Right-handed 310
Helix 131
131
F
131 137Right-handed alpha
Helix 132
132
F
147 160Right-handed alpha
Helix 133
133
F
170 174Right-handed 310
Helix 134
134
F
200 207Right-handed 310
Helix 135
135
F
214 219Right-handed alpha
Helix 136
136
F
224 235Right-handed alpha
Helix 137
137
F
236 240Right-handed 310
Helix 138
138
F
253 270Right-handed alpha
Helix 139
139
F
277 286Right-handed alpha
Helix 140
140
F
292 313Right-handed alpha
Helix 141
141
F
361 371Right-handed alpha
Helix 142
142
F
399 404Right-handed alpha
Helix 143
143
F
405 410Right-handed 310
Helix 144
144
K
122 135Right-handed alpha
Helix 145
145
K
137 141Right-handed 310
Helix 146
146
K
155 159Right-handed 310
Helix 147
147
G
8 13Right-handed alpha
Helix 148
148
G
13 31Right-handed alpha
Helix 149
149
G
39 51Right-handed alpha
Helix 150
150
G
66 72Right-handed alpha
Helix 151
151
G
84 95Right-handed alpha
Helix 152
152
G
108 115Right-handed alpha
Helix 153
153
G
118 123Right-handed 310
Helix 154
154
G
132 145Right-handed alpha
Helix 155
155
G
189 198Right-handed alpha
Helix 156
156
G
213 226Right-handed alpha
Helix 157
157
G
236 249Right-handed alpha
Helix 158
158
G
262 276Right-handed alpha
Helix 159
159
G
282 291Right-handed alpha
Helix 160
160
G
291 296Right-handed alpha
Helix 161
161
G
302 317Right-handed alpha
Helix 162
162
G
337 369Right-handed alpha
Helix 163
163
G
376 387Right-handed alpha
Helix 164
164
G
388 390Right-handed 310
Helix 165
165
G
397 402Right-handed alpha
Helix 166
166
G
408 416Right-handed alpha
Helix 167
167
G
422 440Right-handed alpha
Helix 168
168
G
449 468Right-handed alpha
Helix 169
169
G
475 485Right-handed alpha
Helix 170
170
G
490 511Right-handed alpha
Helix 171
171
H
17 22Right-handed alpha
Helix 172
172
H
40 49Right-handed alpha
Helix 173
173
H
58 70Right-handed alpha
Helix 174
174
H
84 88Right-handed 310
Helix 175
175
H
95 99Right-handed 310
Helix 176
176
H
102 115Right-handed alpha
Helix 177
177
H
126 130Right-handed 310
Helix 178
178
H
131 137Right-handed alpha
Helix 179
179
H
147 160Right-handed alpha
Helix 180
180
H
171 174Right-handed 310
Helix 181
181
H
200 207Right-handed 310
Helix 182
182
H
214 220Right-handed alpha
Helix 183
183
H
224 235Right-handed alpha
Helix 184
184
H
237 241Right-handed 310
Helix 185
185
H
253 270Right-handed alpha
Helix 186
186
H
277 287Right-handed alpha
Helix 187
187
H
292 313Right-handed alpha
Helix 188
188
H
366 371Right-handed alpha
Helix 189
189
H
372 375Right-handed 310
Helix 190
190
H
397 403Right-handed alpha
Helix 191
191
H
404 408Right-handed 310
Helix 192
192
H
412 416Right-handed 310
Helix 193
193
L
122 135Right-handed alpha
Helix 194
194
L
137 141Right-handed 310
Helix 195
195
L
156 160Right-handed 310
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There are 26 sheets in PDB entry 3DBL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
101 105first strand
Strand 2
A
56 60parallel
Strand 3
A
32 35parallel
Strand 4
A
125 129parallel
Strand 5
A
150 155parallel
Strand 6
A
159 165anti-parallel
Strand 7
A
519 523anti-parallel
Strand 8
A
528 532anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 171first strand
Strand 2
A
391 393anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
119 123first strand
Strand 2
B
74 78parallel
Strand 3
B
51 54parallel
Strand 4
B
140 143parallel
Strand 5
B
177 183parallel
Strand 6
B
186 192anti-parallel
Strand 7
B
322 325anti-parallel
Strand 8
B
331 334anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
164 165first strand
Strand 2
B
168 169anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
351 352first strand
Strand 2
B
430 437parallel
Strand 3
B
422 427anti-parallel
Strand 4
B
381 384anti-parallel
Strand 5
B
389 393anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
112 117first strand
Strand 2
I
101 106anti-parallel
Strand 3
I
166 169parallel
Strand 4
I
143 145anti-parallel
Strand 5
I
148 149anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
104 105first strand
Strand 2
C
56 60parallel
Strand 3
C
32 35parallel
Strand 4
C
126 129parallel
Strand 5
C
150 156parallel
Strand 6
C
159 165anti-parallel
Strand 7
C
519 523anti-parallel
Strand 8
C
528 532anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
169 171first strand
Strand 2
C
391 393anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
119 123first strand
Strand 2
D
74 78parallel
Strand 3
D
51 54parallel
Strand 4
D
140 143parallel
Strand 5
D
177 183parallel
Strand 6
D
186 192anti-parallel
Strand 7
D
321 325anti-parallel
Strand 8
D
331 335anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
164 165first strand
Strand 2
D
168 169anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
351 355first strand
Strand 2
D
430 440parallel
Strand 3
D
423 427anti-parallel
Strand 4
D
380 384anti-parallel
Strand 5
D
389 393anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
112 116first strand
Strand 2
J
102 106anti-parallel
Strand 3
J
166 169parallel
Strand 4
J
143 145anti-parallel
Strand 5
J
148 149anti-parallel
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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
104 105first strand
Strand 2
E
56 60parallel
Strand 3
E
32 35parallel
Strand 4
E
125 129parallel
Strand 5
E
150 156parallel
Strand 6
E
159 165anti-parallel
Strand 7
E
519 523anti-parallel
Strand 8
E
528 532anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
169 171first strand
Strand 2
E
391 393anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
121 123first strand
Strand 2
F
75 78parallel
Strand 3
F
51 54parallel
Strand 4
F
140 143parallel
Strand 5
F
177 183parallel
Strand 6
F
186 192anti-parallel
Strand 7
F
323 325anti-parallel
Strand 8
F
331 333anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
353 354first strand
Strand 2
F
438 439parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
380 381first strand
Strand 2
F
425 427anti-parallel
Strand 3
F
430 434anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
112 116first strand
Strand 2
K
102 106anti-parallel
Strand 3
K
166 169parallel
Strand 4
K
143 145anti-parallel
Strand 5
K
148 149anti-parallel
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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
104 105first strand
Strand 2
G
56 60parallel
Strand 3
G
32 35parallel
Strand 4
G
125 129parallel
Strand 5
G
150 156parallel
Strand 6
G
159 165anti-parallel
Strand 7
G
519 523anti-parallel
Strand 8
G
528 532anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
169 171first strand
Strand 2
G
391 393anti-parallel
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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
121 123first strand
Strand 2
H
75 78parallel
Strand 3
H
51 54parallel
Strand 4
H
140 143parallel
Strand 5
H
177 179parallel
Strand 6
H
191 192anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
164 165first strand
Strand 2
H
168 169anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
181 183first strand
Strand 2
H
186 189anti-parallel
Strand 3
H
322 324anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
353 354first strand
Strand 2
H
438 439parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
383 384first strand
Strand 2
H
389 390anti-parallel
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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
112 116first strand
Strand 2
L
102 106anti-parallel
Strand 3
L
166 170parallel
Strand 4
L
142 144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il