Analysis of interatomic Contacts of Structural Units in PDB entry:
3DBQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DBQ entry

There is 1 chain in PDB entry 3DBQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 515HIS 796
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3DBQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
561 579Right-handed alpha
Helix 2
2
A
609 616Right-handed alpha
Helix 3
3
A
620 641Right-handed alpha
Helix 4
4
A
649 651Right-handed 310
Helix 5
5
A
691 698Right-handed alpha
Helix 6
6
A
712 730Right-handed alpha
Helix 7
7
A
739 749Right-handed alpha
Helix 8
8
A
761 772Right-handed alpha
Helix 9
9
A
781 787Right-handed alpha
Helix 10
10
A
788 793Right-handed alpha
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There are 2 sheets in PDB entry 3DBQ. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
518 519first strand
Strand 2
A
524 531anti-parallel
Strand 3
A
537 543anti-parallel
Strand 4
A
549 556anti-parallel
Strand 5
A
597 602anti-parallel
Strand 6
A
588 593anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
607 608first strand
Strand 2
A
653 656anti-parallel
Strand 3
A
659 662anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il