Analysis of interatomic Contacts of Structural Units in PDB entry:
3DC1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DC1 entry

There are 8 chains in PDB entry 3DC1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1SER 262
A
ILE 264LEU 425
B
MET 1SER 262
B
ILE 264LEU 425
C
MET 1SER 262
C
ILE 264LEU 425
D
MET 1SER 262
D
ILE 264LEU 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 79 helices in PDB entry 3DC1. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
8 14Right-handed alpha
Helix 3
3
A
42 46Right-handed 310
Helix 4
4
A
64 72Right-handed alpha
Helix 5
5
A
80 95Right-handed alpha
Helix 6
6
A
103 107Right-handed 310
Helix 7
7
A
116 129Right-handed alpha
Helix 8
8
A
142 150Right-handed alpha
Helix 9
9
A
151 153Right-handed 310
Helix 10
10
A
167 176Right-handed alpha
Helix 11
11
A
177 178Right-handed 310
Helix 12
12
A
179 184Right-handed 310
Helix 13
13
A
185 189Right-handed 310
Helix 14
14
A
209 224Right-handed alpha
Helix 15
15
A
246 250Right-handed 310
Helix 16
16
A
278 289Right-handed alpha
Helix 17
17
A
296 311Right-handed alpha
Helix 18
18
A
311 342Right-handed alpha
Helix 19
19
A
366 372Right-handed alpha
Helix 20
20
A
372 377Right-handed alpha
Helix 21
21
A
385 388Right-handed 310
Helix 22
22
A
406 425Right-handed alpha
Helix 23
23
B
3 7Right-handed 310
Helix 24
24
B
8 13Right-handed alpha
Helix 25
25
B
42 46Right-handed 310
Helix 26
26
B
64 72Right-handed alpha
Helix 27
27
B
80 96Right-handed alpha
Helix 28
28
B
116 129Right-handed alpha
Helix 29
29
B
142 150Right-handed alpha
Helix 30
30
B
151 153Right-handed 310
Helix 31
31
B
167 176Right-handed alpha
Helix 32
32
B
177 178Right-handed 310
Helix 33
33
B
179 189Right-handed 310
Helix 34
34
B
209 223Right-handed alpha
Helix 35
35
B
233 237Right-handed 310
Helix 36
36
B
246 250Right-handed 310
Helix 37
37
B
278 289Right-handed alpha
Helix 38
38
B
296 341Right-handed alpha
Helix 39
39
B
365 372Right-handed alpha
Helix 40
40
B
372 377Right-handed alpha
Helix 41
41
B
385 388Right-handed 310
Helix 42
42
B
406 423Right-handed alpha
Helix 43
43
C
8 13Right-handed alpha
Helix 44
44
C
42 46Right-handed 310
Helix 45
45
C
64 72Right-handed alpha
Helix 46
46
C
80 96Right-handed alpha
Helix 47
47
C
103 107Right-handed 310
Helix 48
48
C
116 129Right-handed alpha
Helix 49
49
C
142 150Right-handed alpha
Helix 50
50
C
151 153Right-handed 310
Helix 51
51
C
167 176Right-handed alpha
Helix 52
52
C
177 178Right-handed 310
Helix 53
53
C
179 189Right-handed 310
Helix 54
54
C
209 223Right-handed alpha
Helix 55
55
C
246 250Right-handed 310
Helix 56
56
C
278 289Right-handed alpha
Helix 57
57
C
296 341Right-handed alpha
Helix 58
58
C
366 372Right-handed alpha
Helix 59
59
C
373 378Right-handed alpha
Helix 60
60
C
385 388Right-handed 310
Helix 61
61
C
406 424Right-handed alpha
Helix 62
62
D
2 7Right-handed 310
Helix 63
63
D
8 13Right-handed alpha
Helix 64
64
D
42 46Right-handed 310
Helix 65
65
D
64 72Right-handed alpha
Helix 66
66
D
80 95Right-handed alpha
Helix 67
67
D
116 129Right-handed alpha
Helix 68
68
D
142 150Right-handed alpha
Helix 69
69
D
151 153Right-handed 310
Helix 70
70
D
167 176Right-handed alpha
Helix 71
71
D
181 189Right-handed 310
Helix 72
72
D
209 223Right-handed alpha
Helix 73
73
D
233 237Right-handed 310
Helix 74
74
D
246 250Right-handed 310
Helix 75
75
D
278 289Right-handed alpha
Helix 76
76
D
296 341Right-handed alpha
Helix 77
77
D
366 373Right-handed alpha
Helix 78
78
D
385 388Right-handed 310
Helix 79
79
D
406 425Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 3DC1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
34 35first strand
Strand 2
B
379 380parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
61 63first strand
Strand 2
A
48 55anti-parallel
Strand 3
B
48 55anti-parallel
Strand 4
B
61 63anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
109 114first strand
Strand 2
A
272 277anti-parallel
Strand 3
A
255 260anti-parallel
Strand 4
A
226 230parallel
Strand 5
A
193 196parallel
Strand 6
A
134 138parallel
Strand 7
A
155 159parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
161 162first strand
Strand 2
A
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
345 347first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
397 401anti-parallel
Strand 4
A
382 383anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
379 380first strand
Strand 2
B
34 35parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
109 114first strand
Strand 2
B
272 277anti-parallel
Strand 3
B
255 260anti-parallel
Strand 4
B
226 230parallel
Strand 5
B
193 196parallel
Strand 6
B
134 138parallel
Strand 7
B
155 159parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
161 162first strand
Strand 2
B
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
345 347first strand
Strand 2
B
355 360anti-parallel
Strand 3
B
397 401anti-parallel
Strand 4
B
382 383anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
34 35first strand
Strand 2
D
379 380parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
61 63first strand
Strand 2
C
48 55anti-parallel
Strand 3
D
48 55anti-parallel
Strand 4
D
61 63anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
109 114first strand
Strand 2
C
272 277anti-parallel
Strand 3
C
255 259anti-parallel
Strand 4
C
226 231parallel
Strand 5
C
193 196parallel
Strand 6
C
134 137parallel
Strand 7
C
155 158parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
161 162first strand
Strand 2
C
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
345 347first strand
Strand 2
C
355 360anti-parallel
Strand 3
C
397 401anti-parallel
Strand 4
C
382 383anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
379 380first strand
Strand 2
D
34 35parallel
Back to list of sheets
Back to top of page

There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
109 114first strand
Strand 2
D
272 277anti-parallel
Strand 3
D
255 259anti-parallel
Strand 4
D
226 231parallel
Strand 5
D
193 196parallel
Strand 6
D
134 138parallel
Strand 7
D
155 159parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
161 162first strand
Strand 2
D
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
345 346first strand
Strand 2
D
355 360anti-parallel
Strand 3
D
397 401anti-parallel
Strand 4
D
382 383anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il