Analysis of interatomic Contacts of Structural Units in PDB entry:
3DEG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DEG entry

There are 23 chains in PDB entry 3DEG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
G 1 A 9
A
C 11 G 15
A
G 18 C 25
A
C 27 A 31
A
U 33 U 33
A
A 35 A 36
A
A 38 A 38
A
U 41 G 45
A
U 47 C 48
A
U 50 G 53
A
C 56 G 57
A
U 59 A 76
B
C 1 G 53
B
U 55 A 76
E
C 153 G 168
F
C 339 G 350
G
C 1043 G 1112
I
C 2646 G 2674
J
U 1944 C 1961
K
A 2547 U 2561
C
MET 1LEU 545
D
ALA 1ALA 123
H
ALA 1ASP 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3DEG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
C
18 28Right-handed alpha
Helix 2
2
C
44 51Right-handed alpha
Helix 3
3
C
84 93Right-handed alpha
Helix 4
4
C
110 122Right-handed alpha
Helix 5
5
C
139 150Right-handed alpha
Helix 6
6
C
168 180Right-handed alpha
Helix 7
7
C
303 305Right-handed 310
Helix 8
8
C
306 319Right-handed alpha
Helix 9
9
C
344 358Right-handed alpha
Helix 10
10
C
386 390Right-handed 310
Helix 11
11
C
392 394Right-handed 310
Helix 12
12
C
414 425Right-handed alpha
Helix 13
13
C
447 452Right-handed alpha
Helix 14
14
C
454 462Right-handed alpha
Helix 15
15
C
492 496Right-handed 310
Helix 16
16
C
503 519Right-handed alpha
Helix 17
17
D
2 9Right-handed alpha
Helix 18
18
H
24 29Right-handed alpha
Helix 19
19
H
33 49Right-handed alpha
Helix 20
20
H
75 84Right-handed alpha
Helix 21
21
H
102 112Right-handed alpha
Helix 22
22
H
113 115Right-handed 310
Helix 23
23
H
120 135Right-handed alpha
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There are 10 sheets in PDB entry 3DEG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
59 64first strand
Strand 2
C
70 77anti-parallel
Strand 3
C
4 10parallel
Strand 4
C
97 103parallel
Strand 5
C
125 131parallel
Strand 6
C
159 160parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
231 233first strand
Strand 2
C
222 225anti-parallel
Strand 3
C
273 276anti-parallel
Strand 4
C
192 201anti-parallel
Strand 5
C
205 214anti-parallel
Strand 6
C
255 259anti-parallel
Strand 7
C
236 240anti-parallel
Strand 8
C
244 246anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
217 218first strand
Strand 2
C
249 250anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
325 331first strand
Strand 2
C
335 342anti-parallel
Strand 3
C
295 301anti-parallel
Strand 4
C
363 365anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
381 384first strand
Strand 2
C
372 376anti-parallel
Strand 3
C
396 411anti-parallel
Strand 4
C
438 446anti-parallel
Strand 5
C
428 435anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
381 384first strand
Strand 2
C
372 376anti-parallel
Strand 3
C
396 411anti-parallel
Strand 4
C
467 477anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
497 500first strand
Strand 2
C
480 487anti-parallel
Strand 3
C
526 532anti-parallel
Strand 4
C
535 542anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
35 37first strand
Strand 2
D
51 54anti-parallel
Strand 3
D
62 65anti-parallel
Strand 4
D
94 96parallel
Strand 5
D
81 83anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
8 12first strand
Strand 2
H
54 60anti-parallel
Strand 3
H
66 70anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
98 101first strand
Strand 2
H
137 140parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il