Analysis of interatomic Contacts of Structural Units in PDB entry:
3DF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DF0 entry

There are 3 chains in PDB entry 3DF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24GLY 701
B
 SER 97SER 270
C
 ALA 137THR 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3DF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 30Right-handed 310
Helix 2
2
A
104 115Right-handed alpha
Helix 3
3
A
117 125Right-handed alpha
Helix 4
4
A
176 188Right-handed alpha
Helix 5
5
A
192 196Right-handed 310
Helix 6
6
A
199 209Right-handed alpha
Helix 7
7
A
223 234Right-handed alpha
Helix 8
8
A
308 313Right-handed alpha
Helix 9
9
A
328 335Right-handed alpha
Helix 10
10
A
377 382Right-handed alpha
Helix 11
11
A
392 396Right-handed 310
Helix 12
12
A
415 421Right-handed 310
Helix 13
13
A
449 456Right-handed alpha
Helix 14
14
A
525 530Right-handed alpha
Helix 15
15
A
531 543Right-handed alpha
Helix 16
16
A
549 562Right-handed alpha
Helix 17
17
A
573 582Right-handed alpha
Helix 18
18
A
593 615Right-handed alpha
Helix 19
19
A
624 634Right-handed alpha
Helix 20
20
A
639 651Right-handed alpha
Helix 21
21
A
658 677Right-handed alpha
Helix 22
22
A
691 699Right-handed alpha
Helix 23
23
B
100 112Right-handed alpha
Helix 24
24
B
118 132Right-handed alpha
Helix 25
25
B
142 154Right-handed alpha
Helix 26
26
B
162 184Right-handed alpha
Helix 27
27
B
192 194Right-handed 310
Helix 28
28
B
195 203Right-handed alpha
Helix 29
29
B
208 220Right-handed alpha
Helix 30
30
B
227 247Right-handed alpha
Helix 31
31
B
248 252Right-handed 310
Helix 32
32
B
260 268Right-handed alpha
Helix 33
33
C
137 143Right-handed alpha
Helix 34
34
C
178 182Right-handed 310
Helix 35
35
C
183 191Right-handed alpha
Helix 36
36
C
213 218Right-handed alpha
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There are 8 sheets in PDB entry 3DF0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
148 155parallel
Strand 3
A
138 145anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
158 160anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 216first strand
Strand 2
A
337 342anti-parallel
Strand 3
A
237 241anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 271first strand
Strand 2
A
280 285anti-parallel
Strand 3
A
323 327anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 365first strand
Strand 2
A
495 505anti-parallel
Strand 3
A
405 413anti-parallel
Strand 4
A
470 477anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 391first strand
Strand 2
A
480 488anti-parallel
Strand 3
A
429 435anti-parallel
Strand 4
A
460 461anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
656 657anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
686 690first strand
Strand 2
B
255 259anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il