Analysis of interatomic Contacts of Structural Units in PDB entry:
3DJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DJA entry

There are 2 chains in PDB entry 3DJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 33LEU 603
B
 SER 33LEU 603
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3DJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 53Right-handed alpha
Helix 2
2
A
56 65Right-handed alpha
Helix 3
3
A
67 82Right-handed alpha
Helix 4
4
A
86 100Right-handed alpha
Helix 5
5
A
156 162Right-handed alpha
Helix 6
6
A
171 182Right-handed alpha
Helix 7
7
A
188 190Right-handed 310
Helix 8
8
A
225 230Right-handed alpha
Helix 9
9
A
231 233Right-handed 310
Helix 10
10
A
334 338Right-handed 310
Helix 11
11
A
347 363Right-handed alpha
Helix 12
12
A
377 387Right-handed alpha
Helix 13
13
A
403 417Right-handed alpha
Helix 14
14
A
422 431Right-handed alpha
Helix 15
15
A
440 460Right-handed alpha
Helix 16
16
A
470 474Right-handed 310
Helix 17
17
A
499 511Right-handed alpha
Helix 18
18
A
571 577Right-handed alpha
Helix 19
19
A
580 597Right-handed alpha
Helix 20
20
B
33 53Right-handed alpha
Helix 21
21
B
56 65Right-handed alpha
Helix 22
22
B
67 81Right-handed alpha
Helix 23
23
B
86 100Right-handed alpha
Helix 24
24
B
156 162Right-handed alpha
Helix 25
25
B
171 182Right-handed alpha
Helix 26
26
B
225 230Right-handed alpha
Helix 27
27
B
231 233Right-handed 310
Helix 28
28
B
334 338Right-handed 310
Helix 29
29
B
347 363Right-handed alpha
Helix 30
30
B
377 386Right-handed alpha
Helix 31
31
B
403 418Right-handed alpha
Helix 32
32
B
422 431Right-handed alpha
Helix 33
33
B
440 461Right-handed alpha
Helix 34
34
B
470 474Right-handed 310
Helix 35
35
B
499 511Right-handed alpha
Helix 36
36
B
571 577Right-handed alpha
Helix 37
37
B
580 596Right-handed alpha
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There are 16 sheets in PDB entry 3DJA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
539 545anti-parallel
Strand 3
A
528 531anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
115 117anti-parallel
Strand 3
A
217 219anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
130 135anti-parallel
Strand 3
A
147 151anti-parallel
Strand 4
A
154 155anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
130 135anti-parallel
Strand 3
A
147 151anti-parallel
Strand 4
A
197 203anti-parallel
Strand 5
A
209 215anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
309 313anti-parallel
Strand 3
A
325 329anti-parallel
Strand 4
A
365 369parallel
Strand 5
A
489 493parallel
Strand 6
A
514 518parallel
Strand 7
A
566 567parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 394first strand
Strand 2
A
476 477anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 400first strand
Strand 2
A
547 550anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
437 438anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
539 545anti-parallel
Strand 3
B
528 531anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
115 117anti-parallel
Strand 3
B
217 219anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 123first strand
Strand 2
B
131 135anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
147 151anti-parallel
Strand 3
B
197 203anti-parallel
Strand 4
B
212 215anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 303first strand
Strand 2
B
310 316anti-parallel
Strand 3
B
322 329anti-parallel
Strand 4
B
365 369parallel
Strand 5
B
489 493parallel
Strand 6
B
515 518parallel
Strand 7
B
566 567parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
393 394first strand
Strand 2
B
476 477anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 400first strand
Strand 2
B
547 550anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
433 434first strand
Strand 2
B
437 438anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il