Analysis of interatomic Contacts of Structural Units in PDB entry:
3DK6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DK6 entry

There are 4 chains in PDB entry 3DK6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 233THR 392
A
THR 394ILE 502
B
LYS 234THR 392
B
THR 394GLU 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3DK6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
238 240Right-handed 310
Helix 2
2
A
263 265Right-handed 310
Helix 3
3
A
279 291Right-handed alpha
Helix 4
4
A
322 330Right-handed alpha
Helix 5
5
A
336 357Right-handed alpha
Helix 6
6
A
365 367Right-handed 310
Helix 7
7
A
373 375Right-handed 310
Helix 8
8
A
402 406Right-handed 310
Helix 9
9
A
407 414Right-handed alpha
Helix 10
10
A
417 434Right-handed alpha
Helix 11
11
A
444 446Right-handed 310
Helix 12
12
A
447 454Right-handed alpha
Helix 13
13
A
465 476Right-handed alpha
Helix 14
14
A
479 483Right-handed 310
Helix 15
15
A
485 502Right-handed alpha
Helix 16
16
B
238 240Right-handed 310
Helix 17
17
B
279 291Right-handed alpha
Helix 18
18
B
322 330Right-handed alpha
Helix 19
19
B
336 357Right-handed alpha
Helix 20
20
B
365 367Right-handed 310
Helix 21
21
B
373 375Right-handed 310
Helix 22
22
B
402 406Right-handed 310
Helix 23
23
B
407 414Right-handed alpha
Helix 24
24
B
417 434Right-handed alpha
Helix 25
25
B
444 454Right-handed alpha
Helix 26
26
B
465 476Right-handed alpha
Helix 27
27
B
479 483Right-handed 310
Helix 28
28
B
485 500Right-handed alpha
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There are 8 sheets in PDB entry 3DK6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
242 247first strand
Strand 2
A
256 261anti-parallel
Strand 3
A
266 272anti-parallel
Strand 4
A
312 316anti-parallel
Strand 5
A
301 305anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
359 360first strand
Strand 2
A
385 386anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
369 371first strand
Strand 2
A
377 379anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
393 394first strand
Strand 2
A
415 416anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
242 244first strand
Strand 2
B
256 261anti-parallel
Strand 3
B
267 272anti-parallel
Strand 4
B
312 316anti-parallel
Strand 5
B
301 305anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
359 360first strand
Strand 2
B
385 386anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
369 371first strand
Strand 2
B
377 379anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
393 394first strand
Strand 2
B
415 416anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il