Analysis of interatomic Contacts of Structural Units in PDB entry:
3DKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DKF entry

There is 1 chain in PDB entry 3DKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 1050GLU 1361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3DKF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1054 1058Right-handed 310
Helix 2
2
A
1059 1066Right-handed alpha
Helix 3
3
A
1067 1070Right-handed 310
Helix 4
4
A
1117 1133Right-handed alpha
Helix 5
5
A
1164 1171Right-handed alpha
Helix 6
6
A
1177 1198Right-handed alpha
Helix 7
7
A
1206 1208Right-handed 310
Helix 8
8
A
1223 1227Right-handed 310
Helix 9
9
A
1246 1250Right-handed 310
Helix 10
10
A
1251 1258Right-handed alpha
Helix 11
11
A
1261 1278Right-handed alpha
Helix 12
12
A
1288 1290Right-handed 310
Helix 13
13
A
1291 1298Right-handed alpha
Helix 14
14
A
1309 1320Right-handed alpha
Helix 15
15
A
1323 1327Right-handed 310
Helix 16
16
A
1329 1343Right-handed alpha
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There are 2 sheets in PDB entry 3DKF. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1077 1087first strand
Strand 2
A
1090 1097anti-parallel
Strand 3
A
1105 1112anti-parallel
Strand 4
A
1152 1158anti-parallel
Strand 5
A
1144 1148anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1210 1212first strand
Strand 2
A
1218 1220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il