Analysis of interatomic Contacts of Structural Units in PDB entry:
3DLL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DLL entry

There are 30 chains in PDB entry 3DLL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
G 1 A 2877
Z
C 2 U 123
A
ALA 32PRO 249
B
MET 1SER 205
C
ALA 2GLU 198
D
GLN 3LYS 179
E
GLY 5LYS 175
F
LYS 71GLU 140
G
LYS 30LEU 171
H
MET 1LEU 134
I
HIS 4GLU 144
J
LYS 6ALA 141
K
HIS 3LEU 115
L
ARG 8GLY 111
M
GLN 2GLU 109
N
PRO 2GLN 118
O
ILE 5ILE 98
P
PHE 8LYS 134
Q
SER 2GLN 94
R
PRO 4THR 113
S
MET 1ARG 175
T
ALA 2GLN 85
U
THR 8GLU 79
V
MET 1GLN 66
W
MET 1GLU 55
Y
ALA 2ALA 59
1
ALA 2LYS 54
2
MET 1ASP 46
3
PRO 2ARG 64
4
MET 1GLY 37
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 3DLL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
B
55 59Right-handed 310
Helix 2
2
B
60 69Right-handed alpha
Helix 3
3
B
115 120Right-handed alpha
Helix 4
4
C
23 39Right-handed alpha
Helix 5
5
C
96 112Right-handed alpha
Helix 6
6
C
122 126Right-handed 310
Helix 7
7
C
130 140Right-handed alpha
Helix 8
8
C
176 183Right-handed alpha
Helix 9
9
D
12 20Right-handed alpha
Helix 10
10
D
50 61Right-handed alpha
Helix 11
11
D
93 100Right-handed alpha
Helix 12
12
D
100 105Right-handed alpha
Helix 13
13
D
162 172Right-handed alpha
Helix 14
14
E
59 82Right-handed alpha
Helix 15
15
E
137 151Right-handed alpha
Helix 16
16
F
74 79Right-handed alpha
Helix 17
17
F
104 112Right-handed alpha
Helix 18
18
F
125 137Right-handed alpha
Helix 19
19
G
50 62Right-handed alpha
Helix 20
20
G
122 129Right-handed alpha
Helix 21
21
G
130 135Right-handed 310
Helix 22
22
G
138 145Right-handed alpha
Helix 23
23
H
116 121Right-handed alpha
Helix 24
24
H
123 129Right-handed alpha
Helix 25
25
I
76 81Right-handed alpha
Helix 26
26
I
126 131Right-handed alpha
Helix 27
27
J
45 59Right-handed alpha
Helix 28
28
J
89 92Right-handed 310
Helix 29
29
J
112 125Right-handed alpha
Helix 30
30
K
14 31Right-handed alpha
Helix 31
31
K
37 56Right-handed alpha
Helix 32
32
K
59 68Right-handed alpha
Helix 33
33
K
72 82Right-handed alpha
Helix 34
34
K
82 87Right-handed alpha
Helix 35
35
K
88 90Right-handed 310
Helix 36
36
L
9 19Right-handed alpha
Helix 37
37
L
67 79Right-handed alpha
Helix 38
38
L
80 83Right-handed 310
Helix 39
39
L
98 110Right-handed alpha
Helix 40
40
M
8 16Right-handed alpha
Helix 41
41
M
60 63Right-handed 310
Helix 42
42
M
104 108Right-handed 310
Helix 43
43
N
9 21Right-handed alpha
Helix 44
44
N
31 70Right-handed alpha
Helix 45
45
N
75 85Right-handed alpha
Helix 46
46
N
95 102Right-handed alpha
Helix 47
47
N
102 118Right-handed alpha
Helix 48
48
O
40 44Right-handed 310
Helix 49
49
O
50 54Right-handed 310
Helix 50
50
P
10 18Right-handed alpha
Helix 51
51
P
34 40Right-handed alpha
Helix 52
52
P
49 58Right-handed alpha
Helix 53
53
P
64 77Right-handed alpha
Helix 54
54
Q
16 23Right-handed alpha
Helix 55
55
Q
34 46Right-handed alpha
Helix 56
56
S
35 43Right-handed alpha
Helix 57
57
S
46 50Right-handed 310
Helix 58
58
U
63 71Right-handed alpha
Helix 59
59
V
3 8Right-handed alpha
Helix 60
60
V
10 19Right-handed alpha
Helix 61
61
V
21 33Right-handed alpha
Helix 62
62
V
40 49Right-handed alpha
Helix 63
63
V
51 63Right-handed alpha
Helix 64
64
W
13 24Right-handed alpha
Helix 65
65
W
37 46Right-handed alpha
Helix 66
66
Y
14 20Right-handed alpha
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There are 35 sheets in PDB entry 3DLL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
37 38first strand
Strand 2
A
61 62anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
93 95first strand
Strand 2
A
103 105anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
142 143first strand
Strand 2
A
192 193anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
168 169first strand
Strand 2
A
172 173anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
175 177first strand
Strand 2
A
181 183anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 8first strand
Strand 2
B
26 28anti-parallel
Strand 3
B
181 184anti-parallel
Strand 4
B
164 176anti-parallel
Strand 5
B
101 107anti-parallel
Strand 6
B
194 199anti-parallel
Strand 7
B
3 8anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
12 16first strand
Strand 2
B
19 23anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 51first strand
Strand 2
B
77 80anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
110 114first strand
Strand 2
B
158 161anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
150 151first strand
Strand 2
C
169 170parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
90 92first strand
Strand 2
D
33 36anti-parallel
Strand 3
D
154 157anti-parallel
Strand 4
D
128 130anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
66 68first strand
Strand 2
D
86 88anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
8 9first strand
Strand 2
E
50 53anti-parallel
Strand 3
E
42 45anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
130 132first strand
Strand 2
E
86 90anti-parallel
Strand 3
E
161 163anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
42 47first strand
Strand 2
G
80 87parallel
Strand 3
G
148 151parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
99 101first strand
Strand 2
G
113 115anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
7 9first strand
Strand 2
H
18 24anti-parallel
Strand 3
H
50 57anti-parallel
Strand 4
H
69 76anti-parallel
Strand 5
H
95 96anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
81 82first strand
Strand 2
H
88 91anti-parallel
Strand 3
M
76 82anti-parallel
Strand 4
M
65 71anti-parallel
Strand 5
M
54 56anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
103 107first strand
Strand 2
J
33 37anti-parallel
Strand 3
J
130 133anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
42 44first strand
Strand 2
J
94 97anti-parallel
Strand 3
J
73 74anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
33 35first strand
Strand 2
K
112 114anti-parallel
Strand 3
K
96 98anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
42 43first strand
Strand 2
L
28 29anti-parallel
Strand 3
L
88 89parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
49 52first strand
Strand 2
M
32 35anti-parallel
Strand 3
M
90 93anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
18 20first strand
Strand 2
O
89 95anti-parallel
Strand 3
O
58 65anti-parallel
Strand 4
O
31 32anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
69 74first strand
Strand 2
O
81 86anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
25 31first strand
Strand 2
P
122 127anti-parallel
Strand 3
P
94 99anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
103 108first strand
Strand 2
P
114 119anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
9 10first strand
Strand 2
Q
24 28anti-parallel
Strand 3
Q
78 81anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
46 48first strand
Strand 2
R
33 39anti-parallel
Strand 3
R
21 24anti-parallel
Strand 4
R
80 81anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
20 24first strand
Strand 2
S
77 84parallel
Strand 3
S
66 72anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
112 114first strand
Strand 2
S
170 172anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
22 23first strand
Strand 2
T
36 39anti-parallel
Strand 3
T
59 61anti-parallel
Strand 4
T
51 53anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
45 47first strand
Strand 2
T
77 82parallel
Strand 3
T
66 70anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
31 32first strand
Strand 2
Y
39 40anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
4
2 3first strand
Strand 2
4
34 35parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il