Analysis of interatomic Contacts of Structural Units in PDB entry:
3DLW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DLW entry

There is 1 chain in PDB entry 3DLW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 24ALA 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3DLW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 45Right-handed alpha
Helix 2
2
A
53 66Right-handed alpha
Helix 3
3
A
69 80Right-handed alpha
Helix 4
4
A
88 105Right-handed alpha
Helix 5
5
A
127 139Right-handed alpha
Helix 6
6
A
149 161Right-handed alpha
Helix 7
7
A
199 203Right-handed 310
Helix 8
8
A
260 267Right-handed alpha
Helix 9
9
A
269 280Right-handed alpha
Helix 10
10
A
301 308Right-handed alpha
Helix 11
11
A
311 315Right-handed 310
Helix 12
12
A
320 325Right-handed alpha
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There are 4 sheets in PDB entry 3DLW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
390 394anti-parallel
Strand 3
A
376 381anti-parallel
Strand 4
A
250 256anti-parallel
Strand 5
A
238 244anti-parallel
Strand 6
A
215 233anti-parallel
Strand 7
A
204 209anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
390 394anti-parallel
Strand 3
A
376 381anti-parallel
Strand 4
A
250 256anti-parallel
Strand 5
A
238 244anti-parallel
Strand 6
A
215 233anti-parallel
Strand 7
A
281 291anti-parallel
Strand 8
A
369 371parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
111 121parallel
Strand 3
A
180 193anti-parallel
Strand 4
A
164 171anti-parallel
Strand 5
A
329 342anti-parallel
Strand 6
A
293 300anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
111 121parallel
Strand 3
A
180 193anti-parallel
Strand 4
A
346 348anti-parallel
Strand 5
A
329 342anti-parallel
Strand 6
A
293 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il