Analysis of interatomic Contacts of Structural Units in PDB entry:
3DPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DPC entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 3DPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2HIS 450
B
 PRO 2LYS 449
C
 HIS 1ALA 2
C
 PRO 4ASP 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3DPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 35Right-handed alpha
Helix 2
2
A
54 66Right-handed alpha
Helix 3
3
A
74 78Right-handed 310
Helix 4
4
A
101 112Right-handed alpha
Helix 5
5
A
131 139Right-handed alpha
Helix 6
6
A
153 158Right-handed alpha
Helix 7
7
A
170 178Right-handed alpha
Helix 8
8
A
182 186Right-handed 310
Helix 9
9
A
190 199Right-handed alpha
Helix 10
10
A
209 213Right-handed 310
Helix 11
11
A
224 232Right-handed alpha
Helix 12
12
A
239 245Right-handed alpha
Helix 13
13
A
276 281Right-handed alpha
Helix 14
14
A
298 311Right-handed alpha
Helix 15
15
A
334 360Right-handed alpha
Helix 16
16
A
425 430Right-handed 310
Helix 17
17
A
435 447Right-handed alpha
Helix 18
18
B
29 37Right-handed alpha
Helix 19
19
B
54 66Right-handed alpha
Helix 20
20
B
101 112Right-handed alpha
Helix 21
21
B
131 138Right-handed alpha
Helix 22
22
B
153 158Right-handed alpha
Helix 23
23
B
170 178Right-handed alpha
Helix 24
24
B
182 186Right-handed 310
Helix 25
25
B
190 199Right-handed alpha
Helix 26
26
B
208 213Right-handed 310
Helix 27
27
B
224 232Right-handed alpha
Helix 28
28
B
239 245Right-handed alpha
Helix 29
29
B
276 281Right-handed alpha
Helix 30
30
B
298 312Right-handed alpha
Helix 31
31
B
334 360Right-handed alpha
Helix 32
32
B
425 430Right-handed 310
Helix 33
33
B
435 447Right-handed alpha
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There are 9 sheets in PDB entry 3DPC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
255 258parallel
Strand 3
A
202 206parallel
Strand 4
A
142 150parallel
Strand 5
A
317 323parallel
Strand 6
A
44 50parallel
Strand 7
A
362 367parallel
Strand 8
A
417 422anti-parallel
Strand 9
A
80 85anti-parallel
Strand 10
A
431 434parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
96 97anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
287 288anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
386 391anti-parallel
Strand 3
A
397 401anti-parallel
Strand 4
A
375 377anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
412 413anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 237first strand
Strand 2
B
255 258parallel
Strand 3
B
202 206parallel
Strand 4
B
142 150parallel
Strand 5
B
317 323parallel
Strand 6
B
44 50parallel
Strand 7
B
362 367parallel
Strand 8
B
417 422anti-parallel
Strand 9
B
80 85anti-parallel
Strand 10
B
431 434parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
96 97anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 269first strand
Strand 2
B
287 288anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 275first strand
Strand 2
B
386 391anti-parallel
Strand 3
B
397 402anti-parallel
Strand 4
B
375 377anti-parallel
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