Analysis of interatomic Contacts of Structural Units in PDB entry:
3DQV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3DQV entry

There are 6 chains in PDB entry 3DQV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 99	GLY 176
C	GLU 1401	ALA 1780
R	LYS 20	LYS 105
B	SER 100	GLY 176
D	GLU 1401	ALA 1780
Y	LYS 19	LYS 105

There are 41 helices in PDB entry 3DQV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	122	134	Right-handed alpha
Helix 2	2	A	137	141	Right-handed 310
Helix 3	3	C	1406	1417	Right-handed alpha
Helix 4	4	C	1419	1424	Right-handed alpha
Helix 5	5	C	1426	1441	Right-handed alpha
Helix 6	6	C	1442	1444	Right-handed 310
Helix 7	7	C	1447	1464	Right-handed alpha
Helix 8	8	C	1469	1483	Right-handed alpha
Helix 9	9	C	1486	1513	Right-handed alpha
Helix 10	10	C	1522	1524	Right-handed 310
Helix 11	11	C	1548	1564	Right-handed alpha
Helix 12	12	C	1597	1605	Right-handed alpha
Helix 13	13	C	1616	1624	Right-handed alpha
Helix 14	14	C	1626	1639	Right-handed alpha
Helix 15	15	C	1656	1660	Right-handed 310
Helix 16	16	C	1694	1726	Right-handed alpha
Helix 17	17	C	1730	1742	Right-handed alpha
Helix 18	18	C	1749	1763	Right-handed alpha
Helix 19	19	R	53	59	Right-handed alpha
Helix 20	20	R	81	86	Right-handed alpha
Helix 21	21	B	122	134	Right-handed alpha
Helix 22	22	B	137	139	Right-handed 310
Helix 23	23	B	155	160	Right-handed 310
Helix 24	24	D	1404	1417	Right-handed alpha
Helix 25	25	D	1419	1425	Right-handed alpha
Helix 26	26	D	1426	1440	Right-handed alpha
Helix 27	27	D	1441	1444	Right-handed 310
Helix 28	28	D	1446	1464	Right-handed alpha
Helix 29	29	D	1469	1483	Right-handed alpha
Helix 30	30	D	1486	1514	Right-handed alpha
Helix 31	31	D	1548	1553	Right-handed alpha
Helix 32	32	D	1553	1564	Right-handed alpha
Helix 33	33	D	1597	1605	Right-handed alpha
Helix 34	34	D	1616	1624	Right-handed alpha
Helix 35	35	D	1626	1639	Right-handed alpha
Helix 36	36	D	1694	1702	Right-handed alpha
Helix 37	37	D	1703	1725	Right-handed alpha
Helix 38	38	D	1731	1742	Right-handed alpha
Helix 39	39	D	1749	1763	Right-handed alpha
Helix 40	40	Y	54	59	Right-handed alpha
Helix 41	41	Y	81	86	Right-handed alpha

There are 11 sheets in PDB entry 3DQV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	101	107	anti-parallel
Strand 3	A	166	169	parallel
Strand 4	A	143	145	anti-parallel
Strand 5	A	148	149	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1526	1527	first strand
Strand 2	R	24	28	parallel
Strand 3	C	1579	1583	anti-parallel
Strand 4	C	1590	1596	anti-parallel
Strand 5	C	1683	1687	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1530	1532	first strand
Strand 2	R	31	35	parallel
Strand 3	C	1569	1573	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1614	1615	first strand
Strand 2	C	1665	1668	anti-parallel
Strand 3	C	1648	1650	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1728	1729	first strand
Strand 2	C	1776	1778	anti-parallel
Strand 3	C	1766	1768	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	117	first strand
Strand 2	B	101	106	anti-parallel
Strand 3	B	166	171	parallel
Strand 4	B	141	145	anti-parallel
Strand 5	B	148	149	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1526	1532	first strand
Strand 2	Y	22	35	parallel
Strand 3	D	1569	1573	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1526	1532	first strand
Strand 2	Y	22	35	parallel
Strand 3	D	1579	1585	anti-parallel
Strand 4	D	1590	1596	anti-parallel
Strand 5	D	1686	1687	parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1614	1615	first strand
Strand 2	D	1665	1668	anti-parallel
Strand 3	D	1648	1650	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1728	1730	first strand
Strand 2	D	1775	1778	anti-parallel
Strand 3	D	1766	1768	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	70	71	first strand
Strand 2	Y	79	80	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3DQV

Analysis of interatomic Contacts of Structural Units in PDB entry:
3DQV