Analysis of interatomic Contacts of Structural Units in PDB entry:
3DSL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DSL entry

There are 2 chains in PDB entry 3DSL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3ALA 418
B
 LYS 4VAL 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3DSL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 25Right-handed alpha
Helix 2
2
A
28 48Right-handed alpha
Helix 3
3
A
73 88Right-handed alpha
Helix 4
4
A
135 151Right-handed alpha
Helix 5
5
A
182 197Right-handed alpha
Helix 6
6
A
198 202Right-handed 310
Helix 7
7
A
206 210Right-handed 310
Helix 8
8
A
317 327Right-handed alpha
Helix 9
9
A
334 343Right-handed 310
Helix 10
10
A
363 368Right-handed 310
Helix 11
11
B
18 25Right-handed alpha
Helix 12
12
B
28 48Right-handed alpha
Helix 13
13
B
73 88Right-handed alpha
Helix 14
14
B
88 93Right-handed alpha
Helix 15
15
B
135 151Right-handed alpha
Helix 16
16
B
182 196Right-handed alpha
Helix 17
17
B
198 202Right-handed 310
Helix 18
18
B
206 210Right-handed 310
Helix 19
19
B
317 327Right-handed alpha
Helix 20
20
B
336 342Right-handed 310
Helix 21
21
B
361 368Right-handed 310
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There are 12 sheets in PDB entry 3DSL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 61first strand
Strand 2
A
9 17parallel
Strand 3
A
97 102parallel
Strand 4
A
126 130parallel
Strand 5
A
112 114anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
282 283anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
308 309anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
372 374anti-parallel
Strand 3
A
381 384anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
357 358anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 410first strand
Strand 2
A
413 416anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 61first strand
Strand 2
B
9 17parallel
Strand 3
B
97 102parallel
Strand 4
B
126 130parallel
Strand 5
B
112 114anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
263 264anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 270first strand
Strand 2
B
283 285anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 303first strand
Strand 2
B
308 309anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 332first strand
Strand 2
B
372 374anti-parallel
Strand 3
B
381 384anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 409first strand
Strand 2
B
414 415anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il