Analysis of interatomic Contacts of Structural Units in PDB entry:
3DTV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DTV entry

There are 7 chains in PDB entry 3DTV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7SER 240
B
 SER 5GLY 147
B
 ARG 149ASP 238
C
 PRO 7GLY 147
C
 ARG 149SER 240
D
 SER 5SER 187
D
 GLY 189SER 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3DTV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 28Right-handed alpha
Helix 2
2
A
47 65Right-handed alpha
Helix 3
3
A
74 80Right-handed alpha
Helix 4
4
A
82 98Right-handed alpha
Helix 5
5
A
104 115Right-handed alpha
Helix 6
6
A
127 141Right-handed alpha
Helix 7
7
A
163 177Right-handed alpha
Helix 8
8
A
195 205Right-handed alpha
Helix 9
9
A
211 224Right-handed alpha
Helix 10
10
A
234 239Right-handed 310
Helix 11
11
B
23 28Right-handed alpha
Helix 12
12
B
47 65Right-handed alpha
Helix 13
13
B
74 80Right-handed alpha
Helix 14
14
B
82 98Right-handed alpha
Helix 15
15
B
104 116Right-handed alpha
Helix 16
16
B
127 141Right-handed alpha
Helix 17
17
B
153 158Right-handed 310
Helix 18
18
B
163 178Right-handed alpha
Helix 19
19
B
195 205Right-handed alpha
Helix 20
20
B
211 224Right-handed alpha
Helix 21
21
B
234 238Right-handed 310
Helix 22
22
C
22 28Right-handed alpha
Helix 23
23
C
47 65Right-handed alpha
Helix 24
24
C
74 80Right-handed alpha
Helix 25
25
C
82 98Right-handed alpha
Helix 26
26
C
104 115Right-handed alpha
Helix 27
27
C
127 141Right-handed alpha
Helix 28
28
C
155 161Right-handed alpha
Helix 29
29
C
163 178Right-handed alpha
Helix 30
30
C
195 205Right-handed alpha
Helix 31
31
C
211 224Right-handed alpha
Helix 32
32
C
234 239Right-handed alpha
Helix 33
33
D
14 18Right-handed 310
Helix 34
34
D
19 26Right-handed alpha
Helix 35
35
D
39 42Right-handed 310
Helix 36
36
D
47 65Right-handed alpha
Helix 37
37
D
75 79Right-handed 310
Helix 38
38
D
82 98Right-handed alpha
Helix 39
39
D
104 116Right-handed alpha
Helix 40
40
D
127 141Right-handed alpha
Helix 41
41
D
155 160Right-handed alpha
Helix 42
42
D
163 177Right-handed alpha
Helix 43
43
D
195 205Right-handed alpha
Helix 44
44
D
211 224Right-handed alpha
Helix 45
45
D
234 239Right-handed alpha
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There are 8 sheets in PDB entry 3DTV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
9 13parallel
Strand 3
A
69 72parallel
Strand 4
A
101 103parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 150first strand
Strand 2
A
119 124parallel
Strand 3
A
183 187parallel
Strand 4
A
208 210parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 37first strand
Strand 2
B
9 13parallel
Strand 3
B
69 72parallel
Strand 4
B
101 103parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 150first strand
Strand 2
B
119 124parallel
Strand 3
B
183 187parallel
Strand 4
B
208 210parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 37first strand
Strand 2
C
9 13parallel
Strand 3
C
69 72parallel
Strand 4
C
101 103parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 150first strand
Strand 2
C
119 124parallel
Strand 3
C
183 187parallel
Strand 4
C
208 210parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 37first strand
Strand 2
D
9 13parallel
Strand 3
D
69 72parallel
Strand 4
D
101 103parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 150first strand
Strand 2
D
119 124parallel
Strand 3
D
183 187parallel
Strand 4
D
208 210parallel
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