Analysis of interatomic Contacts of Structural Units in PDB entry:
3DU7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DU7 entry

There are 5 chains in PDB entry 3DU7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2SER 439
B
 ARG 2ASP 437
C
 ARG 2SER 439
D
 ARG 2ASP 437
E
 ALA 4GLU 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 82 helices in PDB entry 3DU7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 29Right-handed alpha
Helix 2
2
A
88 90Right-handed 310
Helix 3
3
A
102 108Right-handed alpha
Helix 4
4
A
114 127Right-handed alpha
Helix 5
5
A
143 161Right-handed alpha
Helix 6
6
A
182 195Right-handed alpha
Helix 7
7
A
205 216Right-handed alpha
Helix 8
8
A
223 239Right-handed alpha
Helix 9
9
A
251 253Right-handed 310
Helix 10
10
A
254 259Right-handed alpha
Helix 11
11
A
287 296Right-handed alpha
Helix 12
12
A
297 301Right-handed 310
Helix 13
13
A
324 333Right-handed alpha
Helix 14
14
A
333 338Right-handed alpha
Helix 15
15
A
385 400Right-handed alpha
Helix 16
16
A
405 412Right-handed alpha
Helix 17
17
A
414 436Right-handed alpha
Helix 18
18
B
12 29Right-handed alpha
Helix 19
19
B
41 47Right-handed 310
Helix 20
20
B
72 74Right-handed 310
Helix 21
21
B
75 80Right-handed alpha
Helix 22
22
B
83 87Right-handed 310
Helix 23
23
B
88 90Right-handed 310
Helix 24
24
B
102 108Right-handed alpha
Helix 25
25
B
110 115Right-handed alpha
Helix 26
26
B
115 129Right-handed alpha
Helix 27
27
B
148 158Right-handed alpha
Helix 28
28
B
182 197Right-handed alpha
Helix 29
29
B
206 214Right-handed alpha
Helix 30
30
B
224 244Right-handed alpha
Helix 31
31
B
252 260Right-handed alpha
Helix 32
32
B
288 293Right-handed alpha
Helix 33
33
B
324 336Right-handed alpha
Helix 34
34
B
384 397Right-handed alpha
Helix 35
35
B
405 413Right-handed alpha
Helix 36
36
B
418 433Right-handed alpha
Helix 37
37
C
10 29Right-handed alpha
Helix 38
38
C
47 52Right-handed 310
Helix 39
39
C
73 79Right-handed alpha
Helix 40
40
C
88 90Right-handed 310
Helix 41
41
C
102 108Right-handed alpha
Helix 42
42
C
114 127Right-handed alpha
Helix 43
43
C
143 161Right-handed alpha
Helix 44
44
C
182 195Right-handed alpha
Helix 45
45
C
205 216Right-handed alpha
Helix 46
46
C
223 239Right-handed alpha
Helix 47
47
C
287 296Right-handed alpha
Helix 48
48
C
297 301Right-handed 310
Helix 49
49
C
324 331Right-handed alpha
Helix 50
50
C
333 338Right-handed alpha
Helix 51
51
C
383 385Right-handed 310
Helix 52
52
C
386 400Right-handed alpha
Helix 53
53
C
405 410Right-handed alpha
Helix 54
54
C
414 436Right-handed alpha
Helix 55
55
D
10 29Right-handed alpha
Helix 56
56
D
41 49Right-handed 310
Helix 57
57
D
72 74Right-handed 310
Helix 58
58
D
75 80Right-handed alpha
Helix 59
59
D
83 87Right-handed 310
Helix 60
60
D
88 90Right-handed 310
Helix 61
61
D
102 108Right-handed alpha
Helix 62
62
D
110 115Right-handed alpha
Helix 63
63
D
115 129Right-handed alpha
Helix 64
64
D
147 158Right-handed alpha
Helix 65
65
D
182 197Right-handed alpha
Helix 66
66
D
206 214Right-handed alpha
Helix 67
67
D
224 244Right-handed alpha
Helix 68
68
D
252 260Right-handed alpha
Helix 69
69
D
288 293Right-handed alpha
Helix 70
70
D
297 301Right-handed 310
Helix 71
71
D
324 339Right-handed alpha
Helix 72
72
D
384 397Right-handed alpha
Helix 73
73
D
405 413Right-handed alpha
Helix 74
74
D
414 417Right-handed 310
Helix 75
75
D
418 433Right-handed alpha
Helix 76
76
D
434 436Right-handed 310
Helix 77
77
E
51 65Right-handed alpha
Helix 78
78
E
72 77Right-handed alpha
Helix 79
79
E
78 83Right-handed alpha
Helix 80
80
E
87 95Right-handed alpha
Helix 81
81
E
105 116Right-handed alpha
Helix 82
82
E
124 132Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 3DU7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
65 68parallel
Strand 3
A
3 9parallel
Strand 4
A
132 140parallel
Strand 5
A
165 171parallel
Strand 6
A
200 203parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
E
18 21anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
5 9parallel
Strand 4
B
134 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 272first strand
Strand 2
B
374 381anti-parallel
Strand 3
B
312 320anti-parallel
Strand 4
B
351 356parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
65 69parallel
Strand 3
C
3 9parallel
Strand 4
C
132 140parallel
Strand 5
C
165 171parallel
Strand 6
C
200 203parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
316 318first strand
Strand 2
C
352 354parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
320 321first strand
Strand 2
C
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
65 69parallel
Strand 3
D
5 9parallel
Strand 4
D
134 140parallel
Strand 5
D
165 172parallel
Strand 6
D
200 205parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
269 272first strand
Strand 2
D
374 381anti-parallel
Strand 3
D
312 320anti-parallel
Strand 4
D
351 356parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il