Analysis of interatomic Contacts of Structural Units in PDB entry:
3DVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DVA entry

There are 4 chains in PDB entry 3DVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 4LYS 368
B
ALA 1PHE 324
C
THR 4LYS 368
D
ALA 1GLU 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are144 helices in PDB entry 3DVA. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
8 18Right-handed alpha
Helix 2
2
A
34 38Right-handed 310
Helix 3
3
A
42 69Right-handed alpha
Helix 4
4
A
81 90Right-handed alpha
Helix 5
5
A
104 111Right-handed alpha
Helix 6
6
A
114 124Right-handed alpha
Helix 7
7
A
125 130Right-handed 310
Helix 8
8
A
145 162Right-handed alpha
Helix 9
9
A
174 177Right-handed 310
Helix 10
10
A
178 191Right-handed alpha
Helix 11
11
A
211 213Right-handed 310
Helix 12
12
A
219 226Right-handed 310
Helix 13
13
A
237 254Right-handed alpha
Helix 14
14
A
287 291Right-handed 310
Helix 15
15
A
294 305Right-handed alpha
Helix 16
16
A
310 335Right-handed alpha
Helix 17
17
A
339 346Right-handed alpha
Helix 18
18
A
352 368Right-handed alpha
Helix 19
19
B
4 20Right-handed alpha
Helix 20
20
B
42 48Right-handed alpha
Helix 21
21
B
58 71Right-handed alpha
Helix 22
22
B
82 88Right-handed 310
Helix 23
23
B
89 95Right-handed alpha
Helix 24
24
B
99 104Right-handed alpha
Helix 25
25
B
132 137Right-handed alpha
Helix 26
26
B
149 163Right-handed alpha
Helix 27
27
B
174 176Right-handed 310
Helix 28
28
B
211 225Right-handed alpha
Helix 29
29
B
242 254Right-handed alpha
Helix 30
30
B
268 280Right-handed alpha
Helix 31
31
B
300 302Right-handed 310
Helix 32
32
B
303 308Right-handed alpha
Helix 33
33
B
310 323Right-handed alpha
Helix 34
34
C
8 19Right-handed alpha
Helix 35
35
C
42 69Right-handed alpha
Helix 36
36
C
81 91Right-handed alpha
Helix 37
37
C
104 111Right-handed alpha
Helix 38
38
C
114 124Right-handed alpha
Helix 39
39
C
125 130Right-handed 310
Helix 40
40
C
145 161Right-handed alpha
Helix 41
41
C
174 177Right-handed 310
Helix 42
42
C
178 191Right-handed alpha
Helix 43
43
C
211 213Right-handed 310
Helix 44
44
C
219 221Right-handed 310
Helix 45
45
C
222 227Right-handed alpha
Helix 46
46
C
237 254Right-handed alpha
Helix 47
47
C
277 281Right-handed 310
Helix 48
48
C
283 288Right-handed alpha
Helix 49
49
C
288 293Right-handed alpha
Helix 50
50
C
294 306Right-handed alpha
Helix 51
51
C
310 334Right-handed alpha
Helix 52
52
C
339 346Right-handed alpha
Helix 53
53
C
352 366Right-handed alpha
Helix 54
54
D
4 20Right-handed alpha
Helix 55
55
D
42 48Right-handed alpha
Helix 56
56
D
58 71Right-handed alpha
Helix 57
57
D
82 88Right-handed 310
Helix 58
58
D
89 95Right-handed alpha
Helix 59
59
D
99 104Right-handed alpha
Helix 60
60
D
132 137Right-handed alpha
Helix 61
61
D
149 163Right-handed alpha
Helix 62
62
D
174 176Right-handed 310
Helix 63
63
D
211 225Right-handed alpha
Helix 64
64
D
242 254Right-handed alpha
Helix 65
65
D
268 281Right-handed alpha
Helix 66
66
D
282 284Right-handed 310
Helix 67
67
D
300 302Right-handed 310
Helix 68
68
D
303 308Right-handed alpha
Helix 69
69
D
310 323Right-handed alpha
Helix 70
72
E
8 18Right-handed alpha
Helix 71
73
E
34 38Right-handed 310
Helix 72
74
E
42 69Right-handed alpha
Helix 73
75
E
81 90Right-handed alpha
Helix 74
76
E
104 110Right-handed alpha
Helix 75
77
E
114 124Right-handed alpha
Helix 76
78
E
125 130Right-handed 310
Helix 77
79
E
145 161Right-handed alpha
Helix 78
80
E
174 177Right-handed 310
Helix 79
81
E
178 191Right-handed alpha
Helix 80
82
E
211 213Right-handed 310
Helix 81
83
E
219 225Right-handed 310
Helix 82
84
E
237 254Right-handed alpha
Helix 83
85
E
288 293Right-handed 310
Helix 84
86
E
294 306Right-handed alpha
Helix 85
87
E
310 335Right-handed alpha
Helix 86
88
E
339 346Right-handed alpha
Helix 87
89
E
352 368Right-handed alpha
Helix 88
90
F
4 20Right-handed alpha
Helix 89
91
F
42 48Right-handed alpha
Helix 90
92
F
58 72Right-handed alpha
Helix 91
93
F
82 88Right-handed 310
Helix 92
94
F
89 95Right-handed alpha
Helix 93
95
F
99 104Right-handed alpha
Helix 94
96
F
132 137Right-handed alpha
Helix 95
97
F
149 163Right-handed alpha
Helix 96
98
F
174 176Right-handed 310
Helix 97
99
F
211 225Right-handed alpha
Helix 98
100
F
242 254Right-handed alpha
Helix 99
101
F
268 280Right-handed alpha
Helix 100
102
F
281 284Right-handed 310
Helix 101
103
F
300 302Right-handed 310
Helix 102
104
F
303 308Right-handed alpha
Helix 103
105
F
310 323Right-handed alpha
Helix 104
106
G
8 18Right-handed alpha
Helix 105
107
G
34 38Right-handed 310
Helix 106
108
G
42 69Right-handed alpha
Helix 107
109
G
81 91Right-handed alpha
Helix 108
110
G
104 111Right-handed alpha
Helix 109
111
G
114 124Right-handed alpha
Helix 110
112
G
125 130Right-handed 310
Helix 111
113
G
145 161Right-handed alpha
Helix 112
114
G
174 177Right-handed 310
Helix 113
115
G
178 191Right-handed alpha
Helix 114
116
G
211 213Right-handed 310
Helix 115
117
G
219 221Right-handed 310
Helix 116
118
G
222 227Right-handed alpha
Helix 117
119
G
237 254Right-handed alpha
Helix 118
120
G
277 281Right-handed 310
Helix 119
121
G
283 290Right-handed alpha
Helix 120
122
G
294 305Right-handed alpha
Helix 121
123
G
310 334Right-handed alpha
Helix 122
124
G
339 346Right-handed alpha
Helix 123
125
G
352 367Right-handed alpha
Helix 124
126
H
4 20Right-handed alpha
Helix 125
127
H
42 48Right-handed alpha
Helix 126
128
H
58 72Right-handed alpha
Helix 127
129
H
82 88Right-handed 310
Helix 128
130
H
89 95Right-handed alpha
Helix 129
131
H
99 104Right-handed alpha
Helix 130
132
H
132 137Right-handed alpha
Helix 131
133
H
149 163Right-handed alpha
Helix 132
134
H
174 176Right-handed 310
Helix 133
135
H
211 224Right-handed alpha
Helix 134
136
H
225 227Right-handed 310
Helix 135
137
H
242 254Right-handed alpha
Helix 136
138
H
268 281Right-handed alpha
Helix 137
139
H
282 284Right-handed 310
Helix 138
140
H
300 302Right-handed 310
Helix 139
141
H
303 308Right-handed alpha
Helix 140
142
H
310 323Right-handed alpha
Helix 141
70
I
132 142Right-handed alpha
Helix 142
71
I
145 149Right-handed 310
Helix 143
143
J
132 142Right-handed alpha
Helix 144
144
J
145 149Right-handed 310
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There are 24 sheets in PDB entry 3DVA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
22 23first strand
Strand 2
A
230 234parallel
Strand 3
A
259 264parallel
Strand 4
A
195 201parallel
Strand 5
A
167 172parallel
Strand 6
A
97 99parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
204 205first strand
Strand 2
A
208 209anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 3first strand
Strand 2
B
181 182anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
52 54first strand
Strand 2
B
23 27parallel
Strand 3
B
75 78parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
113 118first strand
Strand 2
B
167 172parallel
Strand 3
B
143 145parallel
Strand 4
B
237 239anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
196 199first strand
Strand 2
B
230 234anti-parallel
Strand 3
B
204 208parallel
Strand 4
B
256 263parallel
Strand 5
B
289 293parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
97 99first strand
Strand 2
C
167 172parallel
Strand 3
C
195 201parallel
Strand 4
C
259 264parallel
Strand 5
C
230 234parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
204 205first strand
Strand 2
C
208 209anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2 3first strand
Strand 2
D
181 182anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
52 54first strand
Strand 2
D
23 27parallel
Strand 3
D
75 79parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
113 118first strand
Strand 2
D
167 172parallel
Strand 3
D
143 145parallel
Strand 4
D
237 239anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
196 199first strand
Strand 2
D
230 234anti-parallel
Strand 3
D
204 208parallel
Strand 4
D
256 263parallel
Strand 5
D
289 293parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
97 99first strand
Strand 2
E
167 172parallel
Strand 3
E
195 201parallel
Strand 4
E
259 264parallel
Strand 5
E
230 234parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
204 205first strand
Strand 2
E
208 209anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
2 3first strand
Strand 2
F
181 182anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
52 54first strand
Strand 2
F
23 27parallel
Strand 3
F
75 79parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
113 118first strand
Strand 2
F
167 172parallel
Strand 3
F
143 145parallel
Strand 4
F
237 239anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
196 199first strand
Strand 2
F
230 234anti-parallel
Strand 3
F
204 208parallel
Strand 4
F
256 263parallel
Strand 5
F
289 293parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
97 99first strand
Strand 2
G
167 172parallel
Strand 3
G
195 201parallel
Strand 4
G
259 264parallel
Strand 5
G
230 233parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
204 205first strand
Strand 2
G
208 209anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
2 3first strand
Strand 2
H
181 182anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
52 54first strand
Strand 2
H
23 27parallel
Strand 3
H
75 79parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
113 118first strand
Strand 2
H
167 172parallel
Strand 3
H
143 145parallel
Strand 4
H
237 239anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
196 199first strand
Strand 2
H
230 234anti-parallel
Strand 3
H
204 208parallel
Strand 4
H
256 263parallel
Strand 5
H
289 293parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il