Analysis of interatomic Contacts of Structural Units in PDB entry:
3DY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3DY6 entry

There are 2 chains in PDB entry 3DY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 208ASP 475
B
 ASP 210ASP 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3DY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
208 226Right-handed alpha
Helix 2
2
A
229 237Right-handed alpha
Helix 3
3
A
251 260Right-handed alpha
Helix 4
4
A
276 302Right-handed alpha
Helix 5
5
A
303 308Right-handed alpha
Helix 6
6
A
310 331Right-handed alpha
Helix 7
7
A
332 334Right-handed 310
Helix 8
8
A
342 344Right-handed 310
Helix 9
9
A
350 355Right-handed alpha
Helix 10
10
A
360 376Right-handed alpha
Helix 11
11
A
380 393Right-handed alpha
Helix 12
12
A
402 425Right-handed alpha
Helix 13
13
A
430 460Right-handed alpha
Helix 14
14
A
466 474Right-handed alpha
Helix 15
15
B
210 226Right-handed alpha
Helix 16
16
B
229 237Right-handed alpha
Helix 17
17
B
251 260Right-handed alpha
Helix 18
18
B
276 302Right-handed alpha
Helix 19
19
B
303 308Right-handed alpha
Helix 20
20
B
310 331Right-handed alpha
Helix 21
21
B
332 334Right-handed 310
Helix 22
22
B
350 355Right-handed alpha
Helix 23
23
B
360 376Right-handed alpha
Helix 24
24
B
380 393Right-handed alpha
Helix 25
25
B
402 425Right-handed alpha
Helix 26
26
B
430 460Right-handed alpha
Helix 27
27
B
466 474Right-handed alpha
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There are 2 sheets in PDB entry 3DY6. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 341anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
346 349parallel
Strand 3
B
338 341anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il