Analysis of interatomic Contacts of Structural Units in PDB entry:
3E0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E0D entry

There are 6 chains in PDB entry 3E0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 T 6 T 25
D
 A 3 A 20
E
 T 6 T 25
F
 A 3 A 20
A
 LEU 5PHE 1205
B
 LEU 5PHE 1205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are113 helices in PDB entry 3E0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
52 62Right-handed alpha
Helix 3
3
A
102 119Right-handed alpha
Helix 4
4
A
128 135Right-handed alpha
Helix 5
5
A
148 156Right-handed alpha
Helix 6
6
A
158 174Right-handed alpha
Helix 7
7
A
186 203Right-handed alpha
Helix 8
8
A
217 219Right-handed 310
Helix 9
9
A
220 232Right-handed alpha
Helix 10
10
A
253 261Right-handed alpha
Helix 11
11
A
262 267Right-handed alpha
Helix 12
12
A
268 280Right-handed alpha
Helix 13
13
A
305 322Right-handed alpha
Helix 14
14
A
327 336Right-handed alpha
Helix 15
15
A
346 357Right-handed alpha
Helix 16
16
A
358 363Right-handed alpha
Helix 17
17
A
379 398Right-handed alpha
Helix 18
18
A
399 415Right-handed alpha
Helix 19
19
A
424 429Right-handed 310
Helix 20
20
A
430 436Right-handed alpha
Helix 21
21
A
449 454Right-handed alpha
Helix 22
22
A
472 485Right-handed alpha
Helix 23
23
A
499 511Right-handed alpha
Helix 24
24
A
514 523Right-handed alpha
Helix 25
25
A
547 552Right-handed alpha
Helix 26
26
A
552 565Right-handed alpha
Helix 27
27
A
585 589Right-handed 310
Helix 28
28
A
606 611Right-handed alpha
Helix 29
29
A
622 640Right-handed alpha
Helix 30
30
A
644 648Right-handed 310
Helix 31
31
A
652 661Right-handed alpha
Helix 32
32
A
672 683Right-handed alpha
Helix 33
33
A
686 697Right-handed alpha
Helix 34
34
A
700 702Right-handed 310
Helix 35
35
A
703 713Right-handed alpha
Helix 36
36
A
726 735Right-handed alpha
Helix 37
37
A
736 738Right-handed 310
Helix 38
38
A
743 755Right-handed alpha
Helix 39
39
A
758 772Right-handed alpha
Helix 40
40
A
776 792Right-handed alpha
Helix 41
41
A
795 809Right-handed alpha
Helix 42
42
A
814 835Right-handed alpha
Helix 43
43
A
835 847Right-handed alpha
Helix 44
44
A
850 863Right-handed alpha
Helix 45
45
A
898 912Right-handed alpha
Helix 46
46
A
917 925Right-handed alpha
Helix 47
47
A
931 942Right-handed alpha
Helix 48
48
A
944 948Right-handed 310
Helix 49
49
A
949 972Right-handed alpha
Helix 50
50
A
994 1007Right-handed alpha
Helix 51
51
A
1013 1017Right-handed 310
Helix 52
52
A
1018 1025Right-handed alpha
Helix 53
53
A
1028 1030Right-handed 310
Helix 54
54
A
1031 1037Right-handed alpha
Helix 55
55
A
1120 1125Right-handed alpha
Helix 56
56
A
1146 1154Right-handed alpha
Helix 57
57
A
1184 1190Right-handed alpha
Helix 58
58
B
24 36Right-handed alpha
Helix 59
59
B
52 62Right-handed alpha
Helix 60
60
B
102 119Right-handed alpha
Helix 61
61
B
128 135Right-handed alpha
Helix 62
62
B
148 156Right-handed alpha
Helix 63
63
B
158 174Right-handed alpha
Helix 64
64
B
186 203Right-handed alpha
Helix 65
65
B
217 219Right-handed 310
Helix 66
66
B
220 232Right-handed alpha
Helix 67
67
B
253 261Right-handed alpha
Helix 68
68
B
262 267Right-handed alpha
Helix 69
69
B
268 280Right-handed alpha
Helix 70
70
B
305 322Right-handed alpha
Helix 71
71
B
327 336Right-handed alpha
Helix 72
72
B
346 357Right-handed alpha
Helix 73
73
B
358 363Right-handed alpha
Helix 74
74
B
379 397Right-handed alpha
Helix 75
75
B
399 415Right-handed alpha
Helix 76
76
B
424 429Right-handed 310
Helix 77
77
B
430 436Right-handed alpha
Helix 78
78
B
449 454Right-handed alpha
Helix 79
79
B
472 485Right-handed alpha
Helix 80
80
B
499 511Right-handed alpha
Helix 81
81
B
514 523Right-handed alpha
Helix 82
82
B
547 551Right-handed 310
Helix 83
83
B
552 565Right-handed alpha
Helix 84
84
B
585 589Right-handed 310
Helix 85
85
B
605 611Right-handed alpha
Helix 86
86
B
622 640Right-handed alpha
Helix 87
87
B
644 648Right-handed 310
Helix 88
88
B
652 661Right-handed alpha
Helix 89
89
B
672 683Right-handed alpha
Helix 90
90
B
686 697Right-handed alpha
Helix 91
91
B
700 702Right-handed 310
Helix 92
92
B
703 713Right-handed alpha
Helix 93
93
B
726 735Right-handed alpha
Helix 94
94
B
736 738Right-handed 310
Helix 95
95
B
743 755Right-handed alpha
Helix 96
96
B
758 772Right-handed alpha
Helix 97
97
B
776 792Right-handed alpha
Helix 98
98
B
795 809Right-handed alpha
Helix 99
99
B
814 834Right-handed alpha
Helix 100
100
B
835 847Right-handed alpha
Helix 101
101
B
850 863Right-handed alpha
Helix 102
102
B
898 912Right-handed alpha
Helix 103
103
B
917 925Right-handed alpha
Helix 104
104
B
931 942Right-handed alpha
Helix 105
105
B
944 948Right-handed 310
Helix 106
106
B
949 972Right-handed alpha
Helix 107
107
B
994 1007Right-handed alpha
Helix 108
108
B
1013 1017Right-handed 310
Helix 109
109
B
1018 1025Right-handed alpha
Helix 110
110
B
1031 1037Right-handed alpha
Helix 111
111
B
1121 1125Right-handed alpha
Helix 112
112
B
1146 1154Right-handed alpha
Helix 113
113
B
1184 1190Right-handed alpha
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There are 15 sheets in PDB entry 3E0D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 47first strand
Strand 2
A
66 76parallel
Strand 3
A
126 127parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 47first strand
Strand 2
A
66 76parallel
Strand 3
A
93 100anti-parallel
Strand 4
A
139 142anti-parallel
Strand 5
A
177 181parallel
Strand 6
A
207 209parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 467first strand
Strand 2
A
615 620parallel
Strand 3
A
578 581anti-parallel
Strand 4
A
489 495anti-parallel
Strand 5
A
572 574anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 467first strand
Strand 2
A
615 620parallel
Strand 3
A
578 581anti-parallel
Strand 4
A
489 495anti-parallel
Strand 5
A
600 605parallel
Strand 6
A
592 594anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
868 869first strand
Strand 2
A
886 888parallel
Strand 3
A
881 883anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1075 1079first strand
Strand 2
A
1068 1072anti-parallel
Strand 3
A
1044 1051anti-parallel
Strand 4
A
1098 1104anti-parallel
Strand 5
A
1114 1118anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1171 1181first strand
Strand 2
A
1156 1166anti-parallel
Strand 3
A
1131 1135parallel
Strand 4
A
1195 1198anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 47first strand
Strand 2
B
66 76parallel
Strand 3
B
126 127parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 47first strand
Strand 2
B
66 76parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
139 142anti-parallel
Strand 5
B
177 181parallel
Strand 6
B
207 209parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
465 467first strand
Strand 2
B
615 620parallel
Strand 3
B
578 581anti-parallel
Strand 4
B
489 490anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
493 494first strand
Strand 2
B
573 574anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
592 594first strand
Strand 2
B
600 602anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
868 869first strand
Strand 2
B
886 888parallel
Strand 3
B
881 883anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1075 1079first strand
Strand 2
B
1068 1072anti-parallel
Strand 3
B
1044 1051anti-parallel
Strand 4
B
1098 1104anti-parallel
Strand 5
B
1114 1120anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1171 1181first strand
Strand 2
B
1156 1166anti-parallel
Strand 3
B
1130 1135parallel
Strand 4
B
1195 1199anti-parallel
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