Analysis of interatomic Contacts of Structural Units in PDB entry:
3E8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3E8E entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 28 chains in PDB entry 3E8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7GLY 9
A
 GLU 11TRP 196
A
 LEU 198VAL 337
A
 ILE 339PHE 350
G
 THR 5ASP 24
B
 GLN 12TRP 196
B
 LEU 198VAL 337
B
 ILE 339PHE 350
C
 THR 5ASP 24
E
 LYS 7GLY 9
E
 GLU 11TRP 196
E
 LEU 198VAL 337
E
 ILE 339PHE 350
F
 THR 5ASP 24
I
 ALA 3GLY 9
I
 GLU 11TRP 196
I
 LEU 198VAL 337
I
 ILE 339PHE 350
J
 THR 5ASP 24
L
 GLU 13TRP 196
L
 LEU 198VAL 337
L
 ILE 339PHE 350
N
 THR 5ASP 24
P
 LYS 7GLY 9
P
 GLU 11TRP 196
P
 LEU 198VAL 337
P
 ILE 339PHE 350
Q
 THR 5ASP 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are101 helices in PDB entry 3E8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 32Right-handed alpha
Helix 2
2
A
39 41Right-handed 310
Helix 3
3
A
76 82Right-handed alpha
Helix 4
4
A
84 98Right-handed alpha
Helix 5
5
A
127 136Right-handed alpha
Helix 6
6
A
139 160Right-handed alpha
Helix 7
7
A
168 170Right-handed 310
Helix 8
8
A
201 205Right-handed 310
Helix 9
9
A
206 211Right-handed alpha
Helix 10
10
A
217 234Right-handed alpha
Helix 11
11
A
242 252Right-handed alpha
Helix 12
12
A
262 273Right-handed alpha
Helix 13
13
A
276 280Right-handed 310
Helix 14
14
A
288 293Right-handed alpha
Helix 15
15
A
294 298Right-handed 310
Helix 16
16
A
301 307Right-handed alpha
Helix 17
17
G
5 13Right-handed alpha
Helix 18
18
B
12 32Right-handed alpha
Helix 19
19
B
39 41Right-handed 310
Helix 20
20
B
76 82Right-handed alpha
Helix 21
21
B
84 98Right-handed alpha
Helix 22
22
B
127 136Right-handed alpha
Helix 23
23
B
139 160Right-handed alpha
Helix 24
24
B
168 170Right-handed 310
Helix 25
25
B
201 205Right-handed 310
Helix 26
26
B
206 211Right-handed alpha
Helix 27
27
B
217 234Right-handed alpha
Helix 28
28
B
242 252Right-handed alpha
Helix 29
29
B
262 273Right-handed alpha
Helix 30
30
B
276 280Right-handed 310
Helix 31
31
B
288 293Right-handed alpha
Helix 32
32
B
294 298Right-handed 310
Helix 33
33
B
301 307Right-handed alpha
Helix 34
34
C
5 13Right-handed alpha
Helix 35
35
E
7 9Right-handed 310
Helix 36
36
E
10 32Right-handed alpha
Helix 37
37
E
39 41Right-handed 310
Helix 38
38
E
76 82Right-handed alpha
Helix 39
39
E
84 98Right-handed alpha
Helix 40
40
E
127 136Right-handed alpha
Helix 41
41
E
139 160Right-handed alpha
Helix 42
42
E
168 170Right-handed 310
Helix 43
43
E
201 205Right-handed 310
Helix 44
44
E
206 211Right-handed alpha
Helix 45
45
E
217 234Right-handed alpha
Helix 46
46
E
242 253Right-handed alpha
Helix 47
47
E
262 273Right-handed alpha
Helix 48
48
E
288 293Right-handed alpha
Helix 49
49
E
294 298Right-handed 310
Helix 50
50
E
301 307Right-handed alpha
Helix 51
51
F
5 13Right-handed alpha
Helix 52
52
I
3 9Right-handed alpha
Helix 53
53
I
10 32Right-handed alpha
Helix 54
54
I
39 41Right-handed 310
Helix 55
55
I
76 82Right-handed alpha
Helix 56
56
I
84 98Right-handed alpha
Helix 57
57
I
127 136Right-handed alpha
Helix 58
58
I
139 160Right-handed alpha
Helix 59
59
I
168 170Right-handed 310
Helix 60
60
I
201 205Right-handed 310
Helix 61
61
I
206 211Right-handed alpha
Helix 62
62
I
217 234Right-handed alpha
Helix 63
63
I
242 253Right-handed alpha
Helix 64
64
I
262 273Right-handed alpha
Helix 65
65
I
276 280Right-handed 310
Helix 66
66
I
288 293Right-handed alpha
Helix 67
67
I
294 298Right-handed 310
Helix 68
68
I
301 307Right-handed alpha
Helix 69
69
J
5 13Right-handed alpha
Helix 70
70
L
13 32Right-handed alpha
Helix 71
71
L
39 41Right-handed 310
Helix 72
72
L
76 82Right-handed alpha
Helix 73
73
L
84 98Right-handed alpha
Helix 74
74
L
127 136Right-handed alpha
Helix 75
75
L
139 160Right-handed alpha
Helix 76
76
L
168 170Right-handed 310
Helix 77
77
L
201 205Right-handed 310
Helix 78
78
L
206 211Right-handed alpha
Helix 79
79
L
217 234Right-handed alpha
Helix 80
80
L
242 253Right-handed alpha
Helix 81
81
L
262 273Right-handed alpha
Helix 82
82
L
288 293Right-handed alpha
Helix 83
83
L
294 298Right-handed 310
Helix 84
84
L
301 307Right-handed alpha
Helix 85
85
N
5 13Right-handed alpha
Helix 86
86
P
9 32Right-handed alpha
Helix 87
87
P
39 41Right-handed 310
Helix 88
88
P
76 82Right-handed alpha
Helix 89
89
P
84 98Right-handed alpha
Helix 90
90
P
127 136Right-handed alpha
Helix 91
91
P
139 160Right-handed alpha
Helix 92
92
P
168 170Right-handed 310
Helix 93
93
P
201 205Right-handed 310
Helix 94
94
P
206 211Right-handed alpha
Helix 95
95
P
217 234Right-handed alpha
Helix 96
96
P
242 253Right-handed alpha
Helix 97
97
P
262 273Right-handed alpha
Helix 98
98
P
288 293Right-handed alpha
Helix 99
99
P
294 298Right-handed 310
Helix 100
100
P
301 307Right-handed alpha
Helix 101
101
Q
5 12Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 3E8E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 51first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
115 121anti-parallel
Strand 5
A
106 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
189 190anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
180 182anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 51first strand
Strand 2
B
55 62anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
115 120anti-parallel
Strand 5
B
106 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
189 190anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
180 182anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 51first strand
Strand 2
E
55 62anti-parallel
Strand 3
E
68 75anti-parallel
Strand 4
E
115 120anti-parallel
Strand 5
E
106 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
162 163first strand
Strand 2
E
189 190anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
172 174first strand
Strand 2
E
180 182anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
43 52first strand
Strand 2
I
55 62anti-parallel
Strand 3
I
68 75anti-parallel
Strand 4
I
115 121anti-parallel
Strand 5
I
106 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
162 163first strand
Strand 2
I
189 190anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
172 174first strand
Strand 2
I
180 182anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
43 51first strand
Strand 2
L
55 62anti-parallel
Strand 3
L
68 75anti-parallel
Strand 4
L
115 121anti-parallel
Strand 5
L
106 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
162 163first strand
Strand 2
L
189 190anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
172 174first strand
Strand 2
L
180 182anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
43 51first strand
Strand 2
P
55 62anti-parallel
Strand 3
P
68 75anti-parallel
Strand 4
P
115 120anti-parallel
Strand 5
P
106 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
162 163first strand
Strand 2
P
189 190anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
172 174first strand
Strand 2
P
180 182anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il