Analysis of interatomic Contacts of Structural Units in PDB entry:
3EBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EBV entry

There is 1 chain in PDB entry 3EBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3EBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 26Right-handed 310
Helix 2
2
A
60 74Right-handed alpha
Helix 3
3
A
93 112Right-handed alpha
Helix 4
4
A
125 141Right-handed alpha
Helix 5
5
A
151 155Right-handed 310
Helix 6
6
A
160 169Right-handed alpha
Helix 7
7
A
170 173Right-handed 310
Helix 8
8
A
198 211Right-handed alpha
Helix 9
9
A
215 217Right-handed 310
Helix 10
10
A
236 250Right-handed alpha
Helix 11
11
A
272 279Right-handed alpha
Helix 12
12
A
281 293Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3EBV. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
32 40anti-parallel
Strand 3
A
77 84parallel
Strand 4
A
115 120parallel
Strand 5
A
145 148parallel
Strand 6
A
175 179parallel
Strand 7
A
219 224parallel
Strand 8
A
267 271parallel
Strand 9
A
6 12parallel
Strand 10
A
32 40parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
193 194anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il