Analysis of interatomic Contacts of Structural Units in PDB entry:
3EFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EFJ entry

There are 2 chains in PDB entry 3EFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1054HIS 1351
B
 ASP 1054HIS 1351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3EFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1059 1067Right-handed alpha
Helix 2
2
A
1072 1074Right-handed 310
Helix 3
3
A
1117 1133Right-handed alpha
Helix 4
4
A
1164 1171Right-handed alpha
Helix 5
5
A
1177 1198Right-handed alpha
Helix 6
6
A
1206 1208Right-handed 310
Helix 7
7
A
1246 1250Right-handed 310
Helix 8
8
A
1251 1257Right-handed alpha
Helix 9
9
A
1261 1278Right-handed alpha
Helix 10
10
A
1291 1298Right-handed alpha
Helix 11
11
A
1309 1320Right-handed alpha
Helix 12
12
A
1329 1344Right-handed alpha
Helix 13
13
B
1059 1067Right-handed alpha
Helix 14
14
B
1072 1074Right-handed 310
Helix 15
15
B
1117 1134Right-handed alpha
Helix 16
16
B
1164 1171Right-handed alpha
Helix 17
17
B
1177 1198Right-handed alpha
Helix 18
18
B
1206 1208Right-handed 310
Helix 19
19
B
1246 1250Right-handed 310
Helix 20
20
B
1253 1258Right-handed alpha
Helix 21
21
B
1261 1278Right-handed alpha
Helix 22
22
B
1291 1299Right-handed alpha
Helix 23
23
B
1309 1320Right-handed alpha
Helix 24
24
B
1323 1327Right-handed 310
Helix 25
25
B
1329 1343Right-handed alpha
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There are 4 sheets in PDB entry 3EFJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1076 1085first strand
Strand 2
A
1092 1098anti-parallel
Strand 3
A
1104 1111anti-parallel
Strand 4
A
1154 1158anti-parallel
Strand 5
A
1144 1146anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1210 1212first strand
Strand 2
A
1218 1220anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1076 1086first strand
Strand 2
B
1091 1098anti-parallel
Strand 3
B
1104 1111anti-parallel
Strand 4
B
1154 1158anti-parallel
Strand 5
B
1144 1146anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1210 1212first strand
Strand 2
B
1218 1220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il