Analysis of interatomic Contacts of Structural Units in PDB entry:
3EFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EFV entry

There are 4 chains in PDB entry 3EFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 4VAL 462
B
 THR 5VAL 462
C
 ALA 6VAL 462
D
 ALA 6VAL 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 73 helices in PDB entry 3EFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 46Right-handed alpha
Helix 2
2
A
49 67Right-handed alpha
Helix 3
3
A
67 80Right-handed alpha
Helix 4
4
A
82 108Right-handed alpha
Helix 5
5
A
115 118Right-handed 310
Helix 6
6
A
140 153Right-handed alpha
Helix 7
7
A
165 179Right-handed alpha
Helix 8
8
A
192 201Right-handed alpha
Helix 9
9
A
213 227Right-handed alpha
Helix 10
10
A
248 262Right-handed alpha
Helix 11
11
A
263 265Right-handed 310
Helix 12
12
A
278 294Right-handed alpha
Helix 13
13
A
312 330Right-handed alpha
Helix 14
14
A
359 364Right-handed alpha
Helix 15
15
A
378 388Right-handed alpha
Helix 16
16
A
401 412Right-handed alpha
Helix 17
17
A
434 436Right-handed 310
Helix 18
18
A
443 450Right-handed alpha
Helix 19
19
B
27 46Right-handed alpha
Helix 20
20
B
49 67Right-handed alpha
Helix 21
21
B
67 80Right-handed alpha
Helix 22
22
B
82 108Right-handed alpha
Helix 23
23
B
115 118Right-handed 310
Helix 24
24
B
140 153Right-handed alpha
Helix 25
25
B
165 179Right-handed alpha
Helix 26
26
B
192 201Right-handed alpha
Helix 27
27
B
213 227Right-handed alpha
Helix 28
28
B
248 262Right-handed alpha
Helix 29
29
B
263 266Right-handed 310
Helix 30
30
B
280 295Right-handed alpha
Helix 31
31
B
312 330Right-handed alpha
Helix 32
32
B
359 364Right-handed alpha
Helix 33
33
B
378 388Right-handed alpha
Helix 34
34
B
401 412Right-handed alpha
Helix 35
35
B
434 436Right-handed 310
Helix 36
36
B
443 450Right-handed alpha
Helix 37
37
C
27 46Right-handed alpha
Helix 38
38
C
49 67Right-handed alpha
Helix 39
39
C
67 80Right-handed alpha
Helix 40
40
C
82 108Right-handed alpha
Helix 41
41
C
115 118Right-handed 310
Helix 42
42
C
140 153Right-handed alpha
Helix 43
43
C
162 164Right-handed 310
Helix 44
44
C
165 179Right-handed alpha
Helix 45
45
C
192 201Right-handed alpha
Helix 46
46
C
213 227Right-handed alpha
Helix 47
47
C
248 262Right-handed alpha
Helix 48
48
C
263 266Right-handed 310
Helix 49
49
C
278 295Right-handed alpha
Helix 50
50
C
312 330Right-handed alpha
Helix 51
51
C
359 364Right-handed alpha
Helix 52
52
C
378 388Right-handed alpha
Helix 53
53
C
401 412Right-handed alpha
Helix 54
54
C
434 436Right-handed 310
Helix 55
55
C
443 450Right-handed alpha
Helix 56
56
D
27 46Right-handed alpha
Helix 57
57
D
49 67Right-handed alpha
Helix 58
58
D
67 80Right-handed alpha
Helix 59
59
D
82 108Right-handed alpha
Helix 60
60
D
115 118Right-handed 310
Helix 61
61
D
140 153Right-handed alpha
Helix 62
62
D
165 179Right-handed alpha
Helix 63
63
D
192 201Right-handed alpha
Helix 64
64
D
213 227Right-handed alpha
Helix 65
65
D
248 262Right-handed alpha
Helix 66
66
D
263 265Right-handed 310
Helix 67
67
D
278 295Right-handed alpha
Helix 68
68
D
312 330Right-handed alpha
Helix 69
69
D
359 364Right-handed alpha
Helix 70
70
D
378 388Right-handed alpha
Helix 71
71
D
401 412Right-handed alpha
Helix 72
72
D
434 436Right-handed 310
Helix 73
73
D
443 450Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3EFV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
19 24anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
120 126anti-parallel
Strand 3
A
452 459anti-parallel
Strand 4
B
416 419parallel
Strand 5
B
394 398parallel
Strand 6
B
239 243parallel
Strand 7
B
271 277parallel
Strand 8
B
370 376parallel
Strand 9
B
350 353parallel
Strand 10
B
332 335anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
156 160parallel
Strand 3
A
129 133parallel
Strand 4
A
205 211parallel
Strand 5
A
231 234parallel
Strand 6
A
438 439anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 335first strand
Strand 2
A
350 353anti-parallel
Strand 3
A
370 376parallel
Strand 4
A
271 277parallel
Strand 5
A
239 243parallel
Strand 6
A
394 398parallel
Strand 7
A
416 419parallel
Strand 8
B
452 459parallel
Strand 9
B
120 126anti-parallel
Strand 10
B
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
19 24anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 188first strand
Strand 2
B
156 160parallel
Strand 3
B
129 133parallel
Strand 4
B
205 211parallel
Strand 5
B
230 234parallel
Strand 6
B
438 439anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 12first strand
Strand 2
C
19 24anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 112first strand
Strand 2
C
120 126anti-parallel
Strand 3
C
452 459anti-parallel
Strand 4
D
416 419parallel
Strand 5
D
395 398parallel
Strand 6
D
239 243parallel
Strand 7
D
271 277parallel
Strand 8
D
370 376parallel
Strand 9
D
350 353parallel
Strand 10
D
332 335anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 188first strand
Strand 2
C
156 160parallel
Strand 3
C
129 133parallel
Strand 4
C
205 211parallel
Strand 5
C
231 234parallel
Strand 6
C
438 439anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
332 335first strand
Strand 2
C
350 353anti-parallel
Strand 3
C
370 376parallel
Strand 4
C
271 277parallel
Strand 5
C
239 243parallel
Strand 6
C
395 398parallel
Strand 7
C
416 419parallel
Strand 8
D
452 459parallel
Strand 9
D
120 126anti-parallel
Strand 10
D
111 112anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 12first strand
Strand 2
D
19 24anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
186 188first strand
Strand 2
D
156 160parallel
Strand 3
D
129 133parallel
Strand 4
D
205 211parallel
Strand 5
D
231 234parallel
Strand 6
D
438 439anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il