Analysis of interatomic Contacts of Structural Units in PDB entry:
3EJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EJ6 entry

There are 4 chains in PDB entry 3EJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 36ASP 716
B
 GLU 36ASP 716
C
 GLU 36ASP 716
D
 GLU 36ASP 716
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are103 helices in PDB entry 3EJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 45Right-handed 310
Helix 2
2
A
81 93Right-handed alpha
Helix 3
3
A
184 186Right-handed 310
Helix 4
4
A
187 196Right-handed alpha
Helix 5
5
A
210 220Right-handed alpha
Helix 6
6
A
223 232Right-handed alpha
Helix 7
7
A
233 236Right-handed 310
Helix 8
8
A
277 288Right-handed alpha
Helix 9
9
A
290 302Right-handed alpha
Helix 10
10
A
316 320Right-handed 310
Helix 11
11
A
355 360Right-handed alpha
Helix 12
12
A
379 398Right-handed alpha
Helix 13
13
A
401 405Right-handed 310
Helix 14
14
A
472 476Right-handed 310
Helix 15
15
A
479 488Right-handed alpha
Helix 16
16
A
490 506Right-handed alpha
Helix 17
17
A
510 525Right-handed alpha
Helix 18
18
A
525 537Right-handed alpha
Helix 19
19
A
580 595Right-handed alpha
Helix 20
20
A
618 622Right-handed 310
Helix 21
21
A
648 660Right-handed alpha
Helix 22
22
A
670 677Right-handed alpha
Helix 23
23
A
690 705Right-handed alpha
Helix 24
24
A
707 711Right-handed 310
Helix 25
25
B
41 45Right-handed 310
Helix 26
26
B
81 93Right-handed alpha
Helix 27
27
B
124 128Right-handed 310
Helix 28
28
B
184 186Right-handed 310
Helix 29
29
B
187 196Right-handed alpha
Helix 30
30
B
210 220Right-handed alpha
Helix 31
31
B
223 232Right-handed alpha
Helix 32
32
B
233 236Right-handed 310
Helix 33
33
B
239 243Right-handed 310
Helix 34
34
B
277 288Right-handed alpha
Helix 35
35
B
290 302Right-handed alpha
Helix 36
36
B
316 320Right-handed 310
Helix 37
37
B
355 360Right-handed alpha
Helix 38
38
B
379 398Right-handed alpha
Helix 39
39
B
401 405Right-handed 310
Helix 40
40
B
472 476Right-handed 310
Helix 41
41
B
479 488Right-handed alpha
Helix 42
42
B
490 507Right-handed alpha
Helix 43
43
B
510 525Right-handed alpha
Helix 44
44
B
525 537Right-handed alpha
Helix 45
45
B
580 593Right-handed alpha
Helix 46
46
B
594 596Right-handed 310
Helix 47
47
B
618 622Right-handed 310
Helix 48
48
B
632 636Right-handed 310
Helix 49
49
B
648 660Right-handed alpha
Helix 50
50
B
670 676Right-handed alpha
Helix 51
51
B
690 705Right-handed alpha
Helix 52
52
B
707 711Right-handed 310
Helix 53
53
C
41 45Right-handed 310
Helix 54
54
C
81 93Right-handed alpha
Helix 55
55
C
124 128Right-handed 310
Helix 56
56
C
184 186Right-handed 310
Helix 57
57
C
187 196Right-handed alpha
Helix 58
58
C
210 220Right-handed alpha
Helix 59
59
C
223 232Right-handed alpha
Helix 60
60
C
233 236Right-handed 310
Helix 61
61
C
239 243Right-handed 310
Helix 62
62
C
277 288Right-handed alpha
Helix 63
63
C
290 302Right-handed alpha
Helix 64
64
C
316 320Right-handed 310
Helix 65
65
C
355 360Right-handed alpha
Helix 66
66
C
379 398Right-handed alpha
Helix 67
67
C
401 405Right-handed 310
Helix 68
68
C
472 476Right-handed 310
Helix 69
69
C
479 488Right-handed alpha
Helix 70
70
C
490 506Right-handed alpha
Helix 71
71
C
510 525Right-handed alpha
Helix 72
72
C
525 537Right-handed alpha
Helix 73
73
C
580 594Right-handed alpha
Helix 74
74
C
618 622Right-handed 310
Helix 75
75
C
630 636Right-handed 310
Helix 76
76
C
648 660Right-handed alpha
Helix 77
77
C
670 677Right-handed alpha
Helix 78
78
C
690 705Right-handed alpha
Helix 79
79
C
707 711Right-handed 310
Helix 80
80
D
40 45Right-handed 310
Helix 81
81
D
81 93Right-handed alpha
Helix 82
82
D
124 128Right-handed 310
Helix 83
83
D
184 186Right-handed 310
Helix 84
84
D
187 196Right-handed alpha
Helix 85
85
D
210 220Right-handed alpha
Helix 86
86
D
223 232Right-handed alpha
Helix 87
87
D
277 288Right-handed alpha
Helix 88
88
D
290 302Right-handed alpha
Helix 89
89
D
316 320Right-handed 310
Helix 90
90
D
355 360Right-handed alpha
Helix 91
91
D
379 398Right-handed alpha
Helix 92
92
D
401 405Right-handed 310
Helix 93
93
D
472 476Right-handed 310
Helix 94
94
D
479 488Right-handed alpha
Helix 95
95
D
490 507Right-handed alpha
Helix 96
96
D
510 525Right-handed alpha
Helix 97
97
D
525 537Right-handed alpha
Helix 98
98
D
581 595Right-handed alpha
Helix 99
99
D
618 622Right-handed 310
Helix 100
100
D
648 660Right-handed alpha
Helix 101
101
D
670 678Right-handed alpha
Helix 102
102
D
690 705Right-handed alpha
Helix 103
103
D
707 711Right-handed 310
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There are 14 sheets in PDB entry 3EJ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
C
427 428parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
D
462 468anti-parallel
Strand 3
C
462 468anti-parallel
Strand 4
B
70 71anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
251 254anti-parallel
Strand 3
A
260 269anti-parallel
Strand 4
A
307 315anti-parallel
Strand 5
A
342 351anti-parallel
Strand 6
A
105 114anti-parallel
Strand 7
A
133 141anti-parallel
Strand 8
A
158 165anti-parallel
Strand 9
A
168 175anti-parallel
Strand 10
A
245 246anti-parallel
Strand 11
A
260 269anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
C
47 48parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 71first strand
Strand 2
B
462 468anti-parallel
Strand 3
A
462 468anti-parallel
Strand 4
D
70 71anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 613first strand
Strand 2
A
598 603parallel
Strand 3
A
570 574parallel
Strand 4
A
624 627parallel
Strand 5
A
664 667parallel
Strand 6
A
686 689parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
D
427 428parallel
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There are 11 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 375first strand
Strand 2
B
251 254anti-parallel
Strand 3
B
260 269anti-parallel
Strand 4
B
307 315anti-parallel
Strand 5
B
342 351anti-parallel
Strand 6
B
105 114anti-parallel
Strand 7
B
133 141anti-parallel
Strand 8
B
158 165anti-parallel
Strand 9
B
168 175anti-parallel
Strand 10
B
245 246anti-parallel
Strand 11
B
260 269anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
427 428first strand
Strand 2
D
47 48parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
612 613first strand
Strand 2
B
598 603parallel
Strand 3
B
570 574parallel
Strand 4
B
624 627parallel
Strand 5
B
664 667parallel
Strand 6
B
686 689parallel
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There are 11 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
374 375first strand
Strand 2
C
251 254anti-parallel
Strand 3
C
260 269anti-parallel
Strand 4
C
307 315anti-parallel
Strand 5
C
342 351anti-parallel
Strand 6
C
105 114anti-parallel
Strand 7
C
133 141anti-parallel
Strand 8
C
158 165anti-parallel
Strand 9
C
168 175anti-parallel
Strand 10
C
245 246anti-parallel
Strand 11
C
260 269anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
612 613first strand
Strand 2
C
598 603parallel
Strand 3
C
570 574parallel
Strand 4
C
624 627parallel
Strand 5
C
664 667parallel
Strand 6
C
686 689parallel
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There are 11 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
374 375first strand
Strand 2
D
251 254anti-parallel
Strand 3
D
260 269anti-parallel
Strand 4
D
307 315anti-parallel
Strand 5
D
342 351anti-parallel
Strand 6
D
105 114anti-parallel
Strand 7
D
133 141anti-parallel
Strand 8
D
158 165anti-parallel
Strand 9
D
168 175anti-parallel
Strand 10
D
245 246anti-parallel
Strand 11
D
260 269anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
612 613first strand
Strand 2
D
598 603parallel
Strand 3
D
570 574parallel
Strand 4
D
624 627parallel
Strand 5
D
664 667parallel
Strand 6
D
686 689parallel
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