Analysis of interatomic Contacts of Structural Units in PDB entry:
3ES6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ES6 entry

There are 2 chains in PDB entry 3ES6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ALA 277
B
 GLN 1GLU 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3ES6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 56Right-handed 310
Helix 2
2
A
62 88Right-handed alpha
Helix 3
3
A
140 149Right-handed alpha
Helix 4
4
A
153 164Right-handed alpha
Helix 5
5
A
164 182Right-handed alpha
Helix 6
6
B
52 56Right-handed 310
Helix 7
7
B
95 99Right-handed 310
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There are 4 sheets in PDB entry 3ES6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
27 33anti-parallel
Strand 4
A
7 17anti-parallel
Strand 5
A
96 106anti-parallel
Strand 6
A
109 119anti-parallel
Strand 7
A
122 128anti-parallel
Strand 8
A
133 136anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 195first strand
Strand 2
A
201 210anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
230 236anti-parallel
Strand 5
B
57 62anti-parallel
Strand 6
B
38 46anti-parallel
Strand 7
B
80 88anti-parallel
Strand 8
B
108 117anti-parallel
Strand 9
B
17 18parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
215 221anti-parallel
Strand 3
A
258 264anti-parallel
Strand 4
A
271 274anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
24 32anti-parallel
Strand 3
B
68 74anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il