Analysis of interatomic Contacts of Structural Units in PDB entry:
3EYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3EYH entry

There are 2 chains in PDB entry 3EYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 865GLU 1033
A
THR 1036LYS 1154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3EYH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
871 873Right-handed 310
Helix 2
2
A
918 931Right-handed alpha
Helix 3
3
A
963 968Right-handed alpha
Helix 4
4
A
969 971Right-handed 310
Helix 5
5
A
976 997Right-handed alpha
Helix 6
6
A
1005 1007Right-handed 310
Helix 7
7
A
1044 1048Right-handed 310
Helix 8
8
A
1049 1056Right-handed alpha
Helix 9
9
A
1060 1076Right-handed alpha
Helix 10
10
A
1079 1082Right-handed 310
Helix 11
11
A
1083 1093Right-handed alpha
Helix 12
12
A
1096 1098Right-handed 310
Helix 13
13
A
1099 1110Right-handed alpha
Helix 14
14
A
1121 1131Right-handed alpha
Helix 15
15
A
1135 1139Right-handed 310
Helix 16
16
A
1141 1151Right-handed alpha
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There are 4 sheets in PDB entry 3EYH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
875 883first strand
Strand 2
A
888 894anti-parallel
Strand 3
A
904 909anti-parallel
Strand 4
A
952 957anti-parallel
Strand 5
A
940 945anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
999 1000first strand
Strand 2
A
1026 1027anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1009 1013first strand
Strand 2
A
1016 1019anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1034 1036first strand
Strand 2
A
1057 1059anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il