Analysis of interatomic Contacts of Structural Units in PDB entry:
3F2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F2F entry

There are 2 chains in PDB entry 3F2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1SER 208
B
MET 1GLN 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3F2F. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
19 32Right-handed alpha
Helix 3
3
A
38 47Right-handed alpha
Helix 4
4
A
49 60Right-handed alpha
Helix 5
5
A
96 108Right-handed alpha
Helix 6
6
A
153 158Right-handed alpha
Helix 7
7
A
159 162Right-handed 310
Helix 8
8
A
167 177Right-handed alpha
Helix 9
9
A
189 206Right-handed alpha
Helix 10
10
B
3 13Right-handed alpha
Helix 11
11
B
19 32Right-handed alpha
Helix 12
12
B
38 47Right-handed alpha
Helix 13
13
B
49 60Right-handed alpha
Helix 14
14
B
96 108Right-handed alpha
Helix 15
15
B
153 158Right-handed alpha
Helix 16
16
B
159 162Right-handed 310
Helix 17
17
B
167 176Right-handed alpha
Helix 18
18
B
189 205Right-handed alpha
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There are 6 sheets in PDB entry 3F2F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
64 65first strand
Strand 2
A
71 73anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
76 77first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
83 87anti-parallel
Strand 4
A
111 116anti-parallel
Strand 5
A
123 128anti-parallel
Strand 6
A
133 137anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
164 165first strand
Strand 2
A
142 145anti-parallel
Strand 3
A
185 188anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
64 65first strand
Strand 2
B
71 73anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
76 77first strand
Strand 2
B
90 94anti-parallel
Strand 3
B
83 87anti-parallel
Strand 4
B
111 116anti-parallel
Strand 5
B
123 128anti-parallel
Strand 6
B
133 137anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
164 165first strand
Strand 2
B
142 145anti-parallel
Strand 3
B
185 188anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il