Analysis of interatomic Contacts of Structural Units in PDB entry:
3F3Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F3Z entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 3F3Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 23ASP 229
A
GLU 231LEU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3F3Z. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
23 27Right-handed alpha
Helix 2
2
A
62 64Right-handed 310
Helix 3
3
A
66 79Right-handed alpha
Helix 4
4
A
109 118Right-handed alpha
Helix 5
5
A
121 142Right-handed alpha
Helix 6
6
A
150 152Right-handed 310
Helix 7
7
A
193 198Right-handed alpha
Helix 8
8
A
204 220Right-handed alpha
Helix 9
9
A
228 239Right-handed alpha
Helix 10
10
A
244 249Right-handed alpha
Helix 11
11
A
252 263Right-handed alpha
Helix 12
12
A
272 277Right-handed alpha
Helix 13
13
A
279 287Right-handed alpha
Helix 14
14
A
289 294Right-handed 310
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There are 3 sheets in PDB entry 3F3Z. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
28 37first strand
Strand 2
A
40 47anti-parallel
Strand 3
A
53 60anti-parallel
Strand 4
A
97 103anti-parallel
Strand 5
A
88 93anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
144 145first strand
Strand 2
A
174 175anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
154 156first strand
Strand 2
A
165 167anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il