Analysis of interatomic Contacts of Structural Units in PDB entry:
3F4V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F4V entry

There are 2 chains in PDB entry 3F4V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5HIS 476
B
 ASN 5HIS 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3F4V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
26 31Right-handed alpha
Helix 3
3
A
42 49Right-handed alpha
Helix 4
4
A
54 58Right-handed 310
Helix 5
5
A
65 80Right-handed alpha
Helix 6
6
A
90 95Right-handed alpha
Helix 7
7
A
103 120Right-handed alpha
Helix 8
8
A
134 142Right-handed alpha
Helix 9
9
A
143 147Right-handed 310
Helix 10
10
A
148 165Right-handed alpha
Helix 11
11
A
176 186Right-handed alpha
Helix 12
12
A
206 230Right-handed alpha
Helix 13
13
A
230 235Right-handed alpha
Helix 14
14
A
253 268Right-handed alpha
Helix 15
15
A
268 278Right-handed alpha
Helix 16
16
A
281 289Right-handed alpha
Helix 17
17
A
290 292Right-handed 310
Helix 18
18
A
296 304Right-handed alpha
Helix 19
19
A
332 337Right-handed alpha
Helix 20
20
A
363 377Right-handed alpha
Helix 21
21
A
396 402Right-handed alpha
Helix 22
22
A
403 423Right-handed alpha
Helix 23
23
A
440 447Right-handed 310
Helix 24
24
A
464 474Right-handed alpha
Helix 25
25
B
11 15Right-handed 310
Helix 26
26
B
26 31Right-handed alpha
Helix 27
27
B
42 49Right-handed alpha
Helix 28
28
B
54 58Right-handed 310
Helix 29
29
B
65 80Right-handed alpha
Helix 30
30
B
90 95Right-handed alpha
Helix 31
31
B
103 120Right-handed alpha
Helix 32
32
B
134 142Right-handed alpha
Helix 33
33
B
143 147Right-handed 310
Helix 34
34
B
148 165Right-handed alpha
Helix 35
35
B
176 186Right-handed alpha
Helix 36
36
B
206 230Right-handed alpha
Helix 37
37
B
230 235Right-handed alpha
Helix 38
38
B
253 268Right-handed alpha
Helix 39
39
B
268 278Right-handed alpha
Helix 40
40
B
281 289Right-handed alpha
Helix 41
41
B
290 292Right-handed 310
Helix 42
42
B
296 304Right-handed alpha
Helix 43
43
B
332 337Right-handed alpha
Helix 44
44
B
363 377Right-handed alpha
Helix 45
45
B
396 402Right-handed alpha
Helix 46
46
B
403 423Right-handed alpha
Helix 47
47
B
440 447Right-handed 310
Helix 48
48
B
464 474Right-handed alpha
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There are 8 sheets in PDB entry 3F4V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
84 88parallel
Strand 3
A
123 127parallel
Strand 4
A
170 175parallel
Strand 5
A
237 243parallel
Strand 6
A
310 313parallel
Strand 7
A
382 386parallel
Strand 8
A
427 433parallel
Strand 9
A
20 24parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 249first strand
Strand 2
A
317 321parallel
Strand 3
A
340 342anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
348 349anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
461 463anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
84 88parallel
Strand 3
B
123 127parallel
Strand 4
B
170 175parallel
Strand 5
B
237 243parallel
Strand 6
B
310 313parallel
Strand 7
B
382 386parallel
Strand 8
B
427 433parallel
Strand 9
B
20 24parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 249first strand
Strand 2
B
317 321parallel
Strand 3
B
340 342anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 345first strand
Strand 2
B
348 349anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 454first strand
Strand 2
B
461 463anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il