Analysis of interatomic Contacts of Structural Units in PDB entry:
3F5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F5X entry

There are 4 chains in PDB entry 3F5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 298
B
 ASP 177LEU 432
C
 MET 1LEU 298
D
 TYR 178LEU 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3F5X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 56Right-handed alpha
Helix 2
2
A
87 94Right-handed alpha
Helix 3
3
A
100 121Right-handed alpha
Helix 4
4
A
129 131Right-handed 310
Helix 5
5
A
165 169Right-handed 310
Helix 6
6
A
170 175Right-handed alpha
Helix 7
7
A
182 199Right-handed alpha
Helix 8
8
A
207 220Right-handed alpha
Helix 9
9
A
229 233Right-handed 310
Helix 10
10
A
247 252Right-handed alpha
Helix 11
11
A
256 267Right-handed alpha
Helix 12
12
A
276 282Right-handed alpha
Helix 13
13
A
283 287Right-handed 310
Helix 14
14
B
178 193Right-handed alpha
Helix 15
15
B
207 225Right-handed alpha
Helix 16
16
B
228 244Right-handed alpha
Helix 17
17
B
249 251Right-handed 310
Helix 18
18
B
252 269Right-handed alpha
Helix 19
19
B
274 282Right-handed alpha
Helix 20
20
B
287 303Right-handed alpha
Helix 21
21
B
310 320Right-handed alpha
Helix 22
22
B
326 340Right-handed alpha
Helix 23
23
B
343 348Right-handed alpha
Helix 24
24
B
351 369Right-handed alpha
Helix 25
25
B
373 381Right-handed alpha
Helix 26
26
B
383 401Right-handed alpha
Helix 27
27
B
402 404Right-handed 310
Helix 28
28
B
407 414Right-handed alpha
Helix 29
29
B
415 419Right-handed 310
Helix 30
30
B
420 424Right-handed 310
Helix 31
31
C
45 56Right-handed alpha
Helix 32
32
C
87 94Right-handed alpha
Helix 33
33
C
100 121Right-handed alpha
Helix 34
34
C
129 131Right-handed 310
Helix 35
35
C
165 169Right-handed 310
Helix 36
36
C
170 175Right-handed alpha
Helix 37
37
C
182 199Right-handed alpha
Helix 38
38
C
207 220Right-handed alpha
Helix 39
39
C
229 233Right-handed 310
Helix 40
40
C
247 252Right-handed alpha
Helix 41
41
C
256 267Right-handed alpha
Helix 42
42
C
276 282Right-handed alpha
Helix 43
43
C
283 287Right-handed 310
Helix 44
44
D
178 193Right-handed alpha
Helix 45
45
D
207 225Right-handed alpha
Helix 46
46
D
228 244Right-handed alpha
Helix 47
47
D
249 251Right-handed 310
Helix 48
48
D
252 269Right-handed alpha
Helix 49
49
D
274 282Right-handed alpha
Helix 50
50
D
287 303Right-handed alpha
Helix 51
51
D
310 320Right-handed alpha
Helix 52
52
D
326 340Right-handed alpha
Helix 53
53
D
343 348Right-handed alpha
Helix 54
54
D
351 369Right-handed alpha
Helix 55
55
D
373 381Right-handed alpha
Helix 56
56
D
383 401Right-handed alpha
Helix 57
57
D
402 404Right-handed 310
Helix 58
58
D
407 414Right-handed alpha
Helix 59
59
D
415 419Right-handed 310
Helix 60
60
D
420 424Right-handed 310
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There are 6 sheets in PDB entry 3F5X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 12first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
75 81anti-parallel
Strand 5
A
66 71anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
141 143anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
150 151anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 12first strand
Strand 2
C
17 23anti-parallel
Strand 3
C
29 36anti-parallel
Strand 4
C
75 81anti-parallel
Strand 5
C
66 71anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 86first strand
Strand 2
C
133 135anti-parallel
Strand 3
C
141 143anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 124first strand
Strand 2
C
150 151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il