Analysis of interatomic Contacts of Structural Units in PDB entry:
3F6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F6E entry

There is 1 chain in PDB entry 3F6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
ALA 2PRO 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3F6E. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
X
3 15Right-handed alpha
Helix 2
2
X
25 27Right-handed 310
Helix 3
3
X
28 33Right-handed alpha
Helix 4
4
X
46 62Right-handed alpha
Helix 5
5
X
71 78Right-handed alpha
Helix 6
6
X
78 88Right-handed alpha
Helix 7
7
X
100 105Right-handed alpha
Helix 8
8
X
114 118Right-handed 310
Helix 9
9
X
131 133Right-handed 310
Helix 10
10
X
134 148Right-handed alpha
Helix 11
11
X
161 163Right-handed 310
Helix 12
12
X
168 175Right-handed 310
Helix 13
13
X
186 200Right-handed alpha
Helix 14
14
X
208 214Right-handed alpha
Helix 15
15
X
216 228Right-handed alpha
Helix 16
16
X
256 265Right-handed alpha
Helix 17
17
X
301 308Right-handed alpha
Helix 18
18
X
317 329Right-handed alpha
Helix 19
19
X
354 366Right-handed alpha
Helix 20
20
X
379 387Right-handed alpha
Helix 21
21
X
405 417Right-handed alpha
Helix 22
22
X
429 433Right-handed 310
Helix 23
23
X
434 436Right-handed 310
Helix 24
24
X
437 445Right-handed alpha
Helix 25
25
X
458 469Right-handed alpha
Helix 26
26
X
482 490Right-handed alpha
Helix 27
27
X
499 513Right-handed alpha
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There are 3 sheets in PDB entry 3F6E. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
40 43first strand
Strand 2
X
19 22parallel
Strand 3
X
65 70parallel
Strand 4
X
92 98parallel
Strand 5
X
154 159parallel
Strand 6
X
126 127parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
249 252first strand
Strand 2
X
231 233parallel
Strand 3
X
204 207parallel
Strand 4
X
269 273parallel
Strand 5
X
294 299parallel
Strand 6
X
312 315parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
395 397first strand
Strand 2
X
371 375parallel
Strand 3
X
422 427parallel
Strand 4
X
449 454parallel
Strand 5
X
517 522parallel
Strand 6
X
493 497parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il