Analysis of interatomic Contacts of Structural Units in PDB entry:
3F78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F78 entry

There are 3 chains in PDB entry 3F78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 128TYR 307
B
 GLY 128TYR 307
C
 GLY 128TYR 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 3F78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
143 161Right-handed alpha
Helix 2
2
A
182 190Right-handed alpha
Helix 3
3
A
191 196Right-handed alpha
Helix 4
4
A
207 219Right-handed alpha
Helix 5
5
A
221 225Right-handed 310
Helix 6
6
A
248 252Right-handed 310
Helix 7
7
A
263 266Right-handed 310
Helix 8
8
A
267 273Right-handed alpha
Helix 9
9
A
274 278Right-handed 310
Helix 10
10
A
281 285Right-handed alpha
Helix 11
11
A
291 297Right-handed 310
Helix 12
12
A
298 305Right-handed alpha
Helix 13
13
B
143 161Right-handed alpha
Helix 14
14
B
182 190Right-handed alpha
Helix 15
15
B
191 196Right-handed alpha
Helix 16
16
B
207 219Right-handed alpha
Helix 17
17
B
221 225Right-handed 310
Helix 18
18
B
248 252Right-handed 310
Helix 19
19
B
263 266Right-handed 310
Helix 20
20
B
267 273Right-handed alpha
Helix 21
21
B
274 278Right-handed 310
Helix 22
22
B
281 285Right-handed alpha
Helix 23
23
B
291 297Right-handed 310
Helix 24
24
B
298 305Right-handed alpha
Helix 25
25
C
143 161Right-handed alpha
Helix 26
26
C
182 190Right-handed alpha
Helix 27
27
C
191 196Right-handed alpha
Helix 28
28
C
207 219Right-handed alpha
Helix 29
29
C
221 225Right-handed 310
Helix 30
30
C
248 252Right-handed 310
Helix 31
31
C
263 266Right-handed 310
Helix 32
32
C
267 273Right-handed alpha
Helix 33
33
C
274 278Right-handed 310
Helix 34
34
C
281 285Right-handed alpha
Helix 35
35
C
291 303Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 3F78. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 181first strand
Strand 2
A
166 173anti-parallel
Strand 3
A
130 137parallel
Strand 4
A
231 238parallel
Strand 5
A
255 261parallel
Strand 6
A
286 289parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 181first strand
Strand 2
B
166 173anti-parallel
Strand 3
B
130 137parallel
Strand 4
B
231 238parallel
Strand 5
B
255 261parallel
Strand 6
B
286 289parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 181first strand
Strand 2
C
166 173anti-parallel
Strand 3
C
130 137parallel
Strand 4
C
231 238parallel
Strand 5
C
255 261parallel
Strand 6
C
286 289parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il