Analysis of interatomic Contacts of Structural Units in PDB entry:
3FTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FTD entry

There is 1 chain in PDB entry 3FTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7SER 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 3FTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 26Right-handed alpha
Helix 2
2
A
40 49Right-handed alpha
Helix 3
3
A
62 70Right-handed alpha
Helix 4
4
A
88 92Right-handed 310
Helix 5
5
A
106 117Right-handed alpha
Helix 6
6
A
118 121Right-handed 310
Helix 7
7
A
130 138Right-handed alpha
Helix 8
8
A
143 152Right-handed alpha
Helix 9
9
A
162 164Right-handed 310
Helix 10
10
A
189 202Right-handed alpha
Helix 11
11
A
207 211Right-handed 310
Helix 12
12
A
213 220Right-handed alpha
Helix 13
13
A
227 231Right-handed 310
Helix 14
14
A
232 245Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3FTD. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
166 167anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
55 59parallel
Strand 3
A
33 38parallel
Strand 4
A
96 101parallel
Strand 5
A
123 129parallel
Strand 6
A
174 181anti-parallel
Strand 7
A
153 161anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il