Analysis of interatomic Contacts of Structural Units in PDB entry:
3G65


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G65 entry

There are 3 chains in PDB entry 3G65 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 273
B
 TYR 15GLU 275
C
 MET 1LEU 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3G65. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 22Right-handed alpha
Helix 2
2
A
77 82Right-handed alpha
Helix 3
3
A
115 117Right-handed 310
Helix 4
4
A
137 141Right-handed 310
Helix 5
5
A
149 156Right-handed alpha
Helix 6
6
A
200 204Right-handed 310
Helix 7
7
A
219 232Right-handed alpha
Helix 8
8
B
24 33Right-handed alpha
Helix 9
9
B
86 94Right-handed alpha
Helix 10
10
B
160 169Right-handed alpha
Helix 11
11
B
224 230Right-handed 310
Helix 12
12
B
231 236Right-handed alpha
Helix 13
13
C
9 27Right-handed alpha
Helix 14
14
C
61 63Right-handed 310
Helix 15
15
C
85 94Right-handed alpha
Helix 16
16
C
139 147Right-handed 310
Helix 17
17
C
162 175Right-handed alpha
Helix 18
18
C
234 244Right-handed alpha
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There are 7 sheets in PDB entry 3G65. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
96 101anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
119 124anti-parallel
Strand 5
B
197 202anti-parallel
Strand 6
B
188 193anti-parallel
Strand 7
B
177 181anti-parallel
Strand 8
B
219 223anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
26 32anti-parallel
Strand 3
A
35 41anti-parallel
Strand 4
A
47 53anti-parallel
Strand 5
A
257 262anti-parallel
Strand 6
A
247 252anti-parallel
Strand 7
A
235 239anti-parallel
Strand 8
A
144 148anti-parallel
Strand 9
A
206 208anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 218first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
175 180anti-parallel
Strand 4
A
194 199anti-parallel
Strand 5
C
127 134anti-parallel
Strand 6
C
112 119anti-parallel
Strand 7
C
100 106anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
17 21anti-parallel
Strand 3
B
107 111anti-parallel
Strand 4
B
119 125anti-parallel
Strand 5
B
128 134anti-parallel
Strand 6
C
199 204anti-parallel
Strand 7
C
190 195anti-parallel
Strand 8
C
179 184anti-parallel
Strand 9
C
228 233anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 85first strand
Strand 2
B
39 44anti-parallel
Strand 3
B
48 55anti-parallel
Strand 4
B
59 66anti-parallel
Strand 5
B
264 271anti-parallel
Strand 6
B
251 258anti-parallel
Strand 7
B
240 246anti-parallel
Strand 8
B
152 159anti-parallel
Strand 9
B
210 215anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
66 70anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 84first strand
Strand 2
C
29 34anti-parallel
Strand 3
C
38 44anti-parallel
Strand 4
C
53 59anti-parallel
Strand 5
C
270 276anti-parallel
Strand 6
C
260 267anti-parallel
Strand 7
C
251 256anti-parallel
Strand 8
C
156 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il