Analysis of interatomic Contacts of Structural Units in PDB entry:
3G84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G84 entry

There are 3 chains in PDB entry 3G84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 205PHE 355
B
 ALA 205PHE 355
C
 ALA 205PHE 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3G84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
207 233Right-handed alpha
Helix 2
2
A
253 264Right-handed alpha
Helix 3
3
A
273 288Right-handed alpha
Helix 4
4
A
324 328Right-handed 310
Helix 5
5
B
205 209Right-handed 310
Helix 6
6
B
210 234Right-handed alpha
Helix 7
7
B
254 263Right-handed alpha
Helix 8
8
B
273 288Right-handed alpha
Helix 9
9
B
324 328Right-handed 310
Helix 10
10
C
207 234Right-handed alpha
Helix 11
11
C
253 264Right-handed alpha
Helix 12
12
C
273 288Right-handed alpha
Helix 13
13
C
324 328Right-handed 310
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There are 6 sheets in PDB entry 3G84. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
243 252anti-parallel
Strand 3
A
349 355anti-parallel
Strand 4
A
267 268anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
331 334anti-parallel
Strand 3
A
340 343anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 240first strand
Strand 2
B
243 253anti-parallel
Strand 3
B
348 355anti-parallel
Strand 4
B
267 268anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
331 334anti-parallel
Strand 3
B
340 343anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
237 240first strand
Strand 2
C
243 252anti-parallel
Strand 3
C
349 355anti-parallel
Strand 4
C
267 268anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 292first strand
Strand 2
C
331 334anti-parallel
Strand 3
C
340 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il