Analysis of interatomic Contacts of Structural Units in PDB entry:
3G8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G8O entry

There are 2 chains in PDB entry 3G8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 682LYS 932
B
LEU 683LYS 932
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 3G8O. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
685 694Right-handed alpha
Helix 2
2
A
710 734Right-handed alpha
Helix 3
3
A
738 742Right-handed 310
Helix 4
4
A
743 772Right-handed alpha
Helix 5
5
A
791 802Right-handed alpha
Helix 6
6
A
802 812Right-handed alpha
Helix 7
7
A
814 827Right-handed alpha
Helix 8
8
A
837 860Right-handed alpha
Helix 9
9
A
862 897Right-handed alpha
Helix 10
10
A
897 902Right-handed alpha
Helix 11
11
A
906 922Right-handed alpha
Helix 12
12
B
685 694Right-handed alpha
Helix 13
13
B
710 736Right-handed alpha
Helix 14
14
B
738 742Right-handed 310
Helix 15
15
B
743 771Right-handed alpha
Helix 16
16
B
785 792Right-handed alpha
Helix 17
17
B
794 812Right-handed alpha
Helix 18
18
B
814 827Right-handed alpha
Helix 19
19
B
837 858Right-handed alpha
Helix 20
20
B
862 897Right-handed alpha
Helix 21
21
B
897 902Right-handed alpha
Helix 22
22
B
906 922Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3G8O. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
776 779first strand
Strand 2
A
782 784anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
829 831first strand
Strand 2
A
925 927anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
776 779first strand
Strand 2
B
782 784anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
829 830first strand
Strand 2
B
926 927anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il