Analysis of interatomic Contacts of Structural Units in PDB entry:
3G8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G8X entry

There are 4 chains in PDB entry 3G8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 438LYS 513
B
MET 439LYS 513
D
T 1 T 16
C
A 1 C 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3G8X. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
457 470Right-handed alpha
Helix 2
2
A
487 491Right-handed 310
Helix 3
3
A
492 503Right-handed alpha
Helix 4
4
A
508 513Right-handed alpha
Helix 5
5
B
457 470Right-handed alpha
Helix 6
6
B
492 503Right-handed alpha
Helix 7
7
B
509 513Right-handed 310
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There is 1 sheet ( A) in PDB entry 3G8X.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
450 451first strand
Strand 2
A
454 455anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il