Analysis of interatomic Contacts of Structural Units in PDB entry:
3GBA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GBA entry

There are 4 chains in PDB entry 3GBA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 257
B
 GLY 1PRO 257
C
 THR 5PRO 257
D
 THR 5PRO 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 3GBA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 30Right-handed 310
Helix 2
2
A
34 48Right-handed alpha
Helix 3
3
A
71 79Right-handed alpha
Helix 4
4
A
92 97Right-handed alpha
Helix 5
5
A
122 128Right-handed alpha
Helix 6
6
A
140 149Right-handed alpha
Helix 7
7
A
151 162Right-handed alpha
Helix 8
8
A
172 183Right-handed alpha
Helix 9
9
A
191 201Right-handed alpha
Helix 10
10
A
225 240Right-handed alpha
Helix 11
11
A
241 251Right-handed alpha
Helix 12
12
B
27 30Right-handed 310
Helix 13
13
B
34 48Right-handed alpha
Helix 14
14
B
71 79Right-handed alpha
Helix 15
15
B
92 97Right-handed alpha
Helix 16
16
B
122 128Right-handed alpha
Helix 17
17
B
140 149Right-handed alpha
Helix 18
18
B
151 162Right-handed alpha
Helix 19
19
B
172 183Right-handed alpha
Helix 20
20
B
191 201Right-handed alpha
Helix 21
21
B
225 240Right-handed alpha
Helix 22
22
B
241 251Right-handed alpha
Helix 23
23
C
27 30Right-handed 310
Helix 24
24
C
34 48Right-handed alpha
Helix 25
25
C
71 79Right-handed alpha
Helix 26
26
C
92 97Right-handed alpha
Helix 27
27
C
122 128Right-handed alpha
Helix 28
28
C
140 149Right-handed alpha
Helix 29
29
C
151 162Right-handed alpha
Helix 30
30
C
172 183Right-handed alpha
Helix 31
31
C
191 199Right-handed alpha
Helix 32
32
C
226 240Right-handed alpha
Helix 33
33
C
241 252Right-handed alpha
Helix 34
34
D
27 30Right-handed 310
Helix 35
35
D
34 48Right-handed alpha
Helix 36
36
D
71 79Right-handed alpha
Helix 37
37
D
92 97Right-handed alpha
Helix 38
38
D
122 128Right-handed alpha
Helix 39
39
D
140 149Right-handed alpha
Helix 40
40
D
151 162Right-handed alpha
Helix 41
41
D
172 183Right-handed alpha
Helix 42
42
D
191 199Right-handed alpha
Helix 43
43
D
226 240Right-handed alpha
Helix 44
44
D
241 252Right-handed alpha
Back to top of page

There are 20 sheets in PDB entry 3GBA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
6 10parallel
Strand 3
A
84 85parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
32 33anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
219 221anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
214 216anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
185 190parallel
Strand 3
A
110 115anti-parallel
Strand 4
A
204 207anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
6 10parallel
Strand 3
B
84 85parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
32 33anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
219 221anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
214 216anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
133 137parallel
Strand 3
B
185 190parallel
Strand 4
B
110 115anti-parallel
Strand 5
B
204 207anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 55first strand
Strand 2
C
6 10parallel
Strand 3
C
84 85parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 19first strand
Strand 2
C
32 33anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
C
219 220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 108first strand
Strand 2
C
214 216anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 135first strand
Strand 2
C
185 190parallel
Strand 3
C
110 115anti-parallel
Strand 4
C
204 207anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 55first strand
Strand 2
D
6 10parallel
Strand 3
D
84 85parallel
Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 19first strand
Strand 2
D
32 33anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
100 101first strand
Strand 2
D
219 220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
106 108first strand
Strand 2
D
214 216anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 135first strand
Strand 2
D
185 190parallel
Strand 3
D
110 115anti-parallel
Strand 4
D
204 207anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il