Analysis of interatomic Contacts of Structural Units in PDB entry:
3GD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GD2 entry

There are 2 chains in PDB entry 3GD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 244GLN 472
B
 ALA 745ALA 755
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3GD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
246 262Right-handed alpha
Helix 2
2
A
266 271Right-handed alpha
Helix 3
3
A
272 274Right-handed 310
Helix 4
4
A
279 305Right-handed alpha
Helix 5
5
A
312 338Right-handed alpha
Helix 6
6
A
344 354Right-handed alpha
Helix 7
7
A
358 375Right-handed alpha
Helix 8
8
A
378 391Right-handed alpha
Helix 9
9
A
400 422Right-handed alpha
Helix 10
10
A
428 457Right-handed alpha
Helix 11
11
A
462 470Right-handed alpha
Helix 12
12
B
746 755Right-handed alpha
Back to top of page
There are no sheets in PDB entry 3GD2
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il