Analysis of interatomic Contacts of Structural Units in PDB entry:
3GD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GD6 entry

There is 1 chain in PDB entry 3GD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3GD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 65Right-handed alpha
Helix 2
2
A
71 83Right-handed alpha
Helix 3
3
A
91 113Right-handed alpha
Helix 4
4
A
115 120Right-handed alpha
Helix 5
5
A
141 156Right-handed alpha
Helix 6
6
A
168 184Right-handed alpha
Helix 7
7
A
185 187Right-handed 310
Helix 8
8
A
199 211Right-handed alpha
Helix 9
9
A
228 239Right-handed alpha
Helix 10
10
A
249 260Right-handed alpha
Helix 11
11
A
268 273Right-handed alpha
Helix 12
12
A
274 288Right-handed alpha
Helix 13
13
A
300 312Right-handed alpha
Helix 14
14
A
324 329Right-handed 310
Helix 15
15
A
360 367Right-handed alpha
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There are 3 sheets in PDB entry 3GD6. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 14first strand
Strand 2
A
20 30anti-parallel
Strand 3
A
35 40anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
344 346anti-parallel
Strand 3
A
340 341anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
160 164parallel
Strand 3
A
188 193parallel
Strand 4
A
219 221parallel
Strand 5
A
243 246parallel
Strand 6
A
264 267parallel
Strand 7
A
291 294parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il