Analysis of interatomic Contacts of Structural Units in PDB entry:
3GE1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GE1 entry

There are 4 chains in PDB entry 3GE1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 0	GLU 498
B	ALA 0	THR 497
C	MSE 1	THR 497
D	GLU 2	THR 497

There are 78 helices in PDB entry 3GE1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	47	65	Right-handed alpha
Helix 2	2	A	69	71	Right-handed 310
Helix 3	3	A	107	117	Right-handed alpha
Helix 4	4	A	119	128	Right-handed alpha
Helix 5	5	A	135	147	Right-handed alpha
Helix 6	6	A	149	155	Right-handed alpha
Helix 7	7	A	164	173	Right-handed alpha
Helix 8	8	A	182	186	Right-handed alpha
Helix 9	9	A	199	206	Right-handed alpha
Helix 10	10	A	227	231	Right-handed 310
Helix 11	11	A	244	252	Right-handed alpha
Helix 12	12	A	308	318	Right-handed alpha
Helix 13	13	A	326	333	Right-handed alpha
Helix 14	14	A	371	399	Right-handed alpha
Helix 15	15	A	409	413	Right-handed 310
Helix 16	16	A	414	425	Right-handed alpha
Helix 17	17	A	436	450	Right-handed alpha
Helix 18	18	A	457	463	Right-handed alpha
Helix 19	19	A	474	495	Right-handed alpha
Helix 20	20	B	47	66	Right-handed alpha
Helix 21	21	B	69	71	Right-handed 310
Helix 22	22	B	107	117	Right-handed alpha
Helix 23	23	B	119	128	Right-handed alpha
Helix 24	24	B	135	147	Right-handed alpha
Helix 25	25	B	149	156	Right-handed alpha
Helix 26	26	B	164	173	Right-handed alpha
Helix 27	27	B	182	186	Right-handed alpha
Helix 28	28	B	199	206	Right-handed alpha
Helix 29	29	B	209	213	Right-handed 310
Helix 30	30	B	227	231	Right-handed 310
Helix 31	31	B	244	252	Right-handed alpha
Helix 32	32	B	309	318	Right-handed alpha
Helix 33	33	B	326	333	Right-handed alpha
Helix 34	34	B	371	399	Right-handed alpha
Helix 35	35	B	409	413	Right-handed 310
Helix 36	36	B	414	426	Right-handed alpha
Helix 37	37	B	436	450	Right-handed alpha
Helix 38	38	B	456	463	Right-handed alpha
Helix 39	39	B	474	495	Right-handed alpha
Helix 40	40	C	47	65	Right-handed alpha
Helix 41	41	C	69	71	Right-handed 310
Helix 42	42	C	107	117	Right-handed alpha
Helix 43	43	C	119	128	Right-handed alpha
Helix 44	44	C	135	147	Right-handed alpha
Helix 45	45	C	149	155	Right-handed alpha
Helix 46	46	C	164	173	Right-handed alpha
Helix 47	47	C	182	186	Right-handed alpha
Helix 48	48	C	199	206	Right-handed alpha
Helix 49	49	C	227	231	Right-handed 310
Helix 50	50	C	244	251	Right-handed alpha
Helix 51	51	C	308	318	Right-handed alpha
Helix 52	52	C	324	326	Right-handed 310
Helix 53	53	C	327	333	Right-handed alpha
Helix 54	54	C	371	399	Right-handed alpha
Helix 55	55	C	409	413	Right-handed 310
Helix 56	56	C	414	426	Right-handed alpha
Helix 57	57	C	436	450	Right-handed alpha
Helix 58	58	C	456	463	Right-handed alpha
Helix 59	59	C	474	495	Right-handed alpha
Helix 60	60	D	47	66	Right-handed alpha
Helix 61	61	D	69	71	Right-handed 310
Helix 62	62	D	107	117	Right-handed alpha
Helix 63	63	D	119	128	Right-handed alpha
Helix 64	64	D	135	147	Right-handed alpha
Helix 65	65	D	149	156	Right-handed alpha
Helix 66	66	D	164	173	Right-handed alpha
Helix 67	67	D	182	186	Right-handed alpha
Helix 68	68	D	199	206	Right-handed alpha
Helix 69	69	D	227	231	Right-handed 310
Helix 70	70	D	244	252	Right-handed alpha
Helix 71	71	D	309	318	Right-handed alpha
Helix 72	72	D	326	333	Right-handed alpha
Helix 73	73	D	371	399	Right-handed alpha
Helix 74	74	D	410	413	Right-handed 310
Helix 75	75	D	414	426	Right-handed alpha
Helix 76	76	D	436	450	Right-handed alpha
Helix 77	77	D	456	463	Right-handed alpha
Helix 78	78	D	474	495	Right-handed alpha

There are 26 sheets in PDB entry 3GE1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	33	first strand
Strand 2	A	14	20	anti-parallel
Strand 3	A	4	10	anti-parallel
Strand 4	A	73	80	parallel
Strand 5	A	237	243	parallel
Strand 6	A	220	225	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	99	100	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	89	first strand
Strand 2	A	159	163	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	215	217	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	197	198	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	293	first strand
Strand 2	A	296	305	anti-parallel
Strand 3	A	268	273	anti-parallel
Strand 4	A	259	264	anti-parallel
Strand 5	A	404	408	parallel
Strand 6	A	428	432	parallel
Strand 7	A	465	469	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	B	361	366	anti-parallel
Strand 4	B	342	344	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	33	first strand
Strand 2	B	14	20	anti-parallel
Strand 3	B	4	10	anti-parallel
Strand 4	B	73	80	parallel
Strand 5	B	237	243	parallel
Strand 6	B	224	225	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	99	100	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	89	first strand
Strand 2	B	159	163	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	181	first strand
Strand 2	B	215	217	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	197	198	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	293	first strand
Strand 2	B	296	305	anti-parallel
Strand 3	B	268	273	anti-parallel
Strand 4	B	260	264	anti-parallel
Strand 5	B	404	408	parallel
Strand 6	B	428	432	parallel
Strand 7	B	465	469	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	33	first strand
Strand 2	C	14	20	anti-parallel
Strand 3	C	4	10	anti-parallel
Strand 4	C	73	80	parallel
Strand 5	C	237	243	parallel
Strand 6	C	224	225	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	99	100	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	89	first strand
Strand 2	C	159	163	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	181	first strand
Strand 2	C	215	217	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	197	198	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	293	first strand
Strand 2	C	296	305	anti-parallel
Strand 3	C	268	273	anti-parallel
Strand 4	C	259	264	anti-parallel
Strand 5	C	404	408	parallel
Strand 6	C	428	432	parallel
Strand 7	C	465	469	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	345	first strand
Strand 2	C	361	366	anti-parallel
Strand 3	D	361	366	anti-parallel
Strand 4	D	342	344	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	33	first strand
Strand 2	D	14	20	anti-parallel
Strand 3	D	4	10	anti-parallel
Strand 4	D	73	80	parallel
Strand 5	D	237	243	parallel
Strand 6	D	224	225	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	99	100	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	89	first strand
Strand 2	D	159	163	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	181	first strand
Strand 2	D	215	217	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	197	198	anti-parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	293	first strand
Strand 2	D	296	305	anti-parallel
Strand 3	D	268	273	anti-parallel
Strand 4	D	260	264	anti-parallel
Strand 5	D	404	408	parallel
Strand 6	D	428	432	parallel
Strand 7	D	465	469	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GE1

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GE1